Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 3.5e-236 821.2 420 100.0
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 8.1e-132 474.6 423 62.2
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 9.0e-131 471.1 423 61.7
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 6.9e-115 418.3 427 54.8
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 2.3e-110 403.3 425 52.2
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 1.1e-109 401.0 425 53.6
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 9.7e-109 397.9 421 53.2
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 3.7e-108 396.0 419 53.5
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 4.8e-108 395.6 433 53.8
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 8.2e-108 394.8 420 53.6
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 1.8e-107 393.7 417 52.8
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 2.4e-107 393.3 422 52.8
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 3.1e-107 392.9 370 57.0
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 9.1e-107 391.3 388 57.5
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 2.0e-106 390.2 415 54.0
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.6e-106 389.8 421 52.5
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 3.4e-106 389.4 424 52.6
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 2.2e-105 386.7 368 57.3
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 2.9e-105 386.3 421 52.7
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 3.8e-105 386.0 421 52.3
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 3.8e-105 386.0 424 51.7
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 3.8e-105 386.0 424 51.7
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 5.0e-105 385.6 421 52.0
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 1.4e-102 377.5 425 49.4
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 2.3e-102 376.7 428 51.6
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 5.1e-102 375.6 421 51.8
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 5.1e-102 375.6 428 50.0
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 4.4e-101 372.5 383 54.3
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 9.7e-101 371.3 369 56.9
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 1.3e-100 370.9 373 53.6
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 2.8e-100 369.8 428 50.2
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 3.7e-100 369.4 428 50.0
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 6.3e-100 368.6 372 54.8
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 4.1e-99 365.9 377 52.8
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 1.2e-98 364.4 376 53.5
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 2.6e-98 363.2 373 52.8
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 1.7e-97 360.5 420 49.3
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 3.8e-97 359.4 408 49.5
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 5.0e-97 359.0 376 51.6
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 5.5e-96 355.5 376 51.3
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 1.6e-95 354.0 366 52.2
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 2.7e-95 353.2 423 48.9
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 2.7e-95 353.2 373 52.5
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 5.2e-94 349.0 396 51.3
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 2.6e-93 346.7 428 46.7
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 9.7e-93 344.7 425 47.3
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 1.3e-92 344.4 364 51.9
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 6.3e-92 342.0 336 56.5
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 1.8e-91 340.5 380 48.4
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 4.1e-91 339.3 385 49.4
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 6.5e-89 332.0 422 46.4
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 2.5e-88 330.1 423 46.3
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 4.2e-88 329.3 425 45.2
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 1.4e-86 324.3 423 48.0
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 6.7e-86 322.0 380 48.2
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 8.8e-86 321.6 419 49.4
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 1.2e-85 321.2 333 53.5
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 1.5e-85 320.9 415 48.2
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 1.5e-85 320.9 374 50.0
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 2.0e-85 320.5 422 48.3
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 2.6e-85 320.1 374 49.2
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 4.4e-85 319.3 364 51.1
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 9.7e-85 318.2 389 47.3
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 1.3e-84 317.8 415 48.0
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 3.7e-84 316.2 412 48.5
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 4.8e-84 315.8 335 52.8
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 1.1e-83 314.7 368 48.6
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 1.4e-83 314.3 414 47.3
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 2.4e-83 313.5 406 43.8
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 7.0e-83 312.0 422 46.2
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 2.0e-82 310.5 378 48.4
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 2.0e-82 310.5 372 47.3
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 2.7e-82 310.1 360 50.3
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 3.5e-82 309.7 414 47.6
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 1.3e-81 307.8 418 46.7
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 3.8e-81 306.2 328 51.5
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 5.0e-81 305.8 375 49.1
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 6.5e-81 305.4 426 46.9
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 8.5e-81 305.1 413 47.2
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 8.5e-81 305.1 413 47.2
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 2.3e-78 297.0 377 47.2
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 4.0e-78 296.2 378 46.6
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 2.0e-77 293.9 361 45.7
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 9.8e-77 291.6 355 48.5
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 1.3e-76 291.2 370 44.9
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 8.3e-76 288.5 388 44.8
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 4.2e-72 276.2 384 44.0
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.2e-66 258.1 314 50.3
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.2e-66 258.1 403 42.7
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 5.9e-66 255.8 381 43.8
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 2.3e-65 253.8 300 50.7
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 1.6e-63 247.7 299 49.5
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 8.0e-63 245.4 376 39.9
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 2.9e-60 236.9 374 42.0
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.1e-59 235.0 246 56.9
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.1e-59 235.0 246 56.9
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 2.0e-58 230.7 378 40.5
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 4.6e-58 229.6 248 54.4
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 6.2e-55 219.2 267 45.7
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 6.6e-49 199.1 379 38.5
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.3e-41 174.9 248 41.1
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 3.0e-41 173.7 400 33.5
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 1.1e-40 171.8 236 45.8
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 9.5e-40 168.7 245 45.7
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.0e-33 147.1 125 58.4
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.0e-33 147.1 125 58.4
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 1.1e-32 145.2 193 46.6
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 9.0e-30 135.6 358 29.9
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.7e-26 124.0 115 58.3
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 3.5e-26 123.6 231 40.7
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 4.6e-26 123.2 185 42.7
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 1.7e-25 121.3 160 45.6
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 1.9e-24 117.9 315 33.3
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 2.6e-21 107.5 130 43.8
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 7.6e-21 105.9 134 50.7
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 1.3e-20 105.1 333 29.1
CBR_g4449 Chara braunii HOM05D006726 ORTHO05D008328 2.8e-07 60.8 139 30.9


User provided reference genes

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