Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 4.3e-279 964.1 535 100.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 5.3e-261 904.0 535 93.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 7.6e-143 511.5 526 52.3
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 3.6e-140 502.7 528 50.9
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 4.6e-140 502.3 259 98.5
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 4.6e-140 502.3 259 98.5
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.8e-139 500.4 259 98.1
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 3.4e-135 486.1 540 49.1
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.0e-134 484.6 543 49.5
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.4e-133 480.7 527 51.6
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.4e-131 474.2 538 49.6
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.0e-130 470.3 538 47.6
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 5.7e-130 468.8 524 51.1
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 2.1e-124 450.3 426 54.2
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 7.4e-122 441.8 484 51.0
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.3e-121 441.0 535 46.0
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.1e-120 436.4 536 44.0
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.0e-119 433.7 527 45.9
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.0e-119 433.7 527 45.9
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.9e-118 429.9 540 44.1
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 5.5e-117 425.6 529 43.9
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.4e-115 421.0 525 44.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 3.0e-115 419.9 526 44.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.0e-114 417.2 535 43.9
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 7.0e-112 408.7 484 48.3
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.5e-111 406.0 484 47.9
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 3.8e-110 402.9 532 42.3
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.8e-110 402.9 527 43.5
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 5.5e-109 399.1 459 46.4
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 8.0e-108 395.2 465 46.9
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.4e-107 394.4 459 46.2
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.2e-107 392.5 472 44.9
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.8e-107 392.1 475 45.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.5e-106 391.0 453 46.1
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 9.8e-106 388.3 533 43.2
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.2e-105 387.1 533 41.5
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 4.8e-105 386.0 532 43.2
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.4e-104 384.4 531 41.8
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 3.1e-104 383.3 533 41.8
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 7.0e-104 382.1 530 43.2
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.2e-103 381.3 533 43.7
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.5e-103 379.8 551 40.5
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-102 377.9 535 40.6
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 1.5e-101 374.4 542 40.0
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.5e-101 373.6 531 42.6
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.1e-100 370.5 540 39.8
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 2.0e-98 364.0 533 40.3
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 7.5e-98 362.1 484 45.2
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 3.7e-97 359.8 533 41.5
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 3.8e-94 349.7 529 36.9
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.8e-94 349.7 536 38.6
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 5.0e-94 349.4 497 40.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.2e-92 344.7 538 38.3
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.4e-91 341.3 538 40.0
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 6.8e-91 339.0 521 42.2
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 2.0e-90 337.4 534 38.6
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.0e-90 337.4 535 37.2
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.3e-89 334.7 540 38.0
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 8.3e-89 332.0 534 39.1
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 3.2e-88 330.1 532 38.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.6e-84 317.8 550 35.5
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 2.6e-82 310.5 526 37.3
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.4e-82 310.1 496 39.9
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 9.2e-80 302.0 509 36.3
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 3.4e-74 283.5 530 34.5
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 6.4e-73 279.3 487 35.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 2.1e-71 274.2 524 31.9
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.6e-71 273.1 534 32.4
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 5.6e-69 266.2 534 32.6
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.2e-68 265.0 496 34.7
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.8e-68 263.8 505 34.7
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 2.8e-68 263.8 425 38.4
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 3.6e-68 263.5 535 34.6
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.1e-67 261.9 523 32.9
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.4e-67 261.5 495 34.3
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.1e-67 260.4 478 35.6
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 3.1e-67 260.4 474 33.5
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 4.0e-67 260.0 497 34.2
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.2e-67 259.6 457 34.8
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.0e-66 257.7 500 32.4
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.2e-65 254.2 502 32.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.9e-65 253.1 492 33.1
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 6.4e-65 252.7 522 31.4
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.9e-64 251.1 467 34.3
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 4.2e-64 250.0 523 33.5
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 3.5e-63 246.9 526 31.7
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.3e-62 244.2 480 33.5
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.0e-62 243.8 479 34.0
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 2.5e-61 240.7 250 49.2
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.1e-60 237.7 491 33.2
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 4.7e-60 236.5 469 33.7
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.7e-60 236.5 415 34.7
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.8e-59 234.6 539 30.8
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 3.1e-59 233.8 524 31.5
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.9e-59 232.6 242 48.8
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 6.9e-59 232.6 516 30.8
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.0e-58 231.1 550 30.2
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 4.9e-57 226.5 488 30.3
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 8.4e-57 225.7 467 31.5
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.4e-56 224.9 254 48.4
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 7.1e-56 222.6 400 35.0
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.2e-55 221.9 388 34.3
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.6e-55 221.5 387 34.6
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.1e-55 221.1 432 31.9
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 7.8e-55 219.2 250 46.4
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.0e-54 218.8 514 30.2
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.0e-54 218.8 514 30.2
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.3e-54 217.6 518 30.1
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 5.1e-54 216.5 464 30.8
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.1e-53 215.3 481 29.9
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.9e-53 214.5 397 33.5
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 2.5e-53 214.2 493 30.2
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.8e-52 210.7 407 33.4
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 4.8e-52 209.9 453 30.9
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 6.2e-52 209.5 558 29.6
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.8e-51 208.0 530 27.9
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.8e-51 208.0 495 31.1
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 3.1e-51 207.2 519 31.4
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 4.0e-51 206.8 483 31.1
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 4.0e-51 206.8 471 30.8
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.5e-50 204.9 260 43.8
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 3.4e-50 203.8 471 30.8
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 4.5e-50 203.4 401 31.9
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.7e-49 201.4 473 28.3
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 7.1e-48 196.1 249 42.2
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.6e-47 194.9 469 28.1
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 2.1e-47 194.5 406 30.3
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 7.9e-47 192.6 539 27.5
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.8e-46 191.4 446 28.7
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 6.7e-46 189.5 410 30.0
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 8.7e-46 189.1 519 29.9
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.1e-45 188.7 428 30.8
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 2.5e-45 187.6 301 36.2
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.5e-45 187.6 258 41.1
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 4.3e-45 186.8 271 41.7
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.4e-43 181.0 413 31.0
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 4.0e-43 180.3 483 26.9
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 4.0e-43 180.3 520 28.8
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 5.3e-43 179.9 527 28.8
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.4e-42 177.2 398 29.9
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 7.6e-42 176.0 412 29.9
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 7.6e-42 176.0 470 28.1
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.7e-41 174.9 418 30.1
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.9e-41 173.3 534 26.2
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 5.5e-40 169.9 451 29.3
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 5.1e-38 163.3 253 41.1
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 8.2e-36 156.0 321 34.6
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.1e-35 155.6 266 36.1
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.4e-35 155.2 416 30.0
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 6.9e-35 152.9 415 29.2
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.5e-34 151.8 419 28.4
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.0e-34 151.4 414 28.3
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 5.8e-34 149.8 418 28.5
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 3.8e-33 147.1 404 28.5
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 3.2e-32 144.1 156 42.9
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 1.0e-30 139.0 156 42.3
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.5e-29 134.4 256 37.1
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.6e-28 131.7 243 35.0
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.6e-26 124.4 279 28.0
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.3e-25 122.1 258 32.2
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.1e-23 114.8 446 26.7
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.0e-22 110.9 245 29.8
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.5e-21 108.6 269 30.9
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.5e-21 108.6 117 42.7
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 4.3e-21 107.1 249 30.9
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 2.2e-20 104.8 112 49.1
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.6e-18 97.8 199 42.2
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 2.5e-16 91.3 269 27.9
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.2e-16 90.9 202 29.7
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 9.4e-16 89.4 140 38.6
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.2e-15 89.0 182 29.7
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 2.7e-15 87.8 151 35.1
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.2e-10 72.4 234 26.1
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 5.0e-09 67.0 131 31.3


User provided reference genes

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