Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.6e-52 209.1 103 100.0
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 9.5e-50 199.9 103 93.2
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 2.8e-49 198.4 103 93.2
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 3.6e-49 198.0 103 92.2
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 6.1e-49 197.2 103 92.2
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 8.0e-49 196.8 103 92.2
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 8.0e-49 196.8 101 92.1
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 1.8e-48 195.7 101 91.1
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 2.3e-48 195.3 103 90.3
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.3e-48 195.3 103 89.3
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 3.1e-48 194.9 103 89.3
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 3.1e-48 194.9 101 91.1
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 5.2e-48 194.1 103 90.3
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.2e-47 193.0 103 87.4
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 1.2e-47 193.0 103 88.3
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.2e-47 193.0 103 87.4
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 1.5e-47 192.6 100 91.0
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 2.6e-47 191.8 101 89.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 2.6e-47 191.8 101 89.1
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.4e-47 191.4 103 86.4
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 4.4e-47 191.0 103 88.3
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 4.4e-47 191.0 103 88.3
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 9.8e-47 189.9 99 88.9
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 9.8e-47 189.9 103 87.4
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 9.8e-47 189.9 103 85.4
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 1.3e-46 189.5 103 85.4
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 1.3e-46 189.5 103 86.4
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 1.3e-46 189.5 102 87.3
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 1.7e-46 189.1 100 87.0
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 1.7e-46 189.1 102 87.3
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 2.2e-46 188.7 112 83.0
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 2.9e-46 188.3 103 86.4
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 2.9e-46 188.3 103 86.4
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.7e-46 188.0 103 88.3
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.7e-46 188.0 103 88.3
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 3.7e-46 188.0 103 88.3
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 86.4
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 86.4
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 6.4e-46 187.2 103 86.4
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 6.4e-46 187.2 103 85.4
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 8.3e-46 186.8 103 85.4
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 8.3e-46 186.8 99 88.9
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 8.3e-46 186.8 100 88.0
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 1.1e-45 186.4 103 85.4
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.4e-45 186.0 103 85.4
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 1.4e-45 186.0 102 84.3
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 1.9e-45 185.7 103 86.4
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 3.2e-45 184.9 102 84.3
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 4.1e-45 184.5 114 79.8
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 4.1e-45 184.5 103 86.4
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 5.4e-45 184.1 103 85.4
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 2.7e-44 181.8 100 83.0
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 2.7e-44 181.8 101 85.1
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 4.6e-44 181.0 107 84.1
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 6.0e-44 180.6 103 83.5
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 6.0e-44 180.6 101 85.1
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 6.0e-44 180.6 101 82.2
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 7.8e-44 180.3 101 83.2
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.0e-43 179.9 101 82.2
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.3e-43 179.5 102 82.4
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.3e-43 179.5 99 83.8
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 1.7e-43 179.1 100 81.0
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 2.3e-43 178.7 102 80.4
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 3.0e-43 178.3 103 80.6
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 6.6e-43 177.2 103 78.6
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 6.6e-43 177.2 103 81.6
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 8.6e-43 176.8 100 79.0
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 8.6e-43 176.8 103 79.6
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.9e-42 175.6 99 82.8
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.9e-42 175.6 99 82.8
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 2.5e-42 175.3 99 79.8
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 2.5e-42 175.3 92 89.1
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 3.3e-42 174.9 98 80.6
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 3.3e-42 174.9 98 80.6
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 3.3e-42 174.9 98 80.6
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 3.3e-42 174.9 98 80.6
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 3.3e-42 174.9 99 78.8
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 4.3e-42 174.5 99 78.8
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 4.3e-42 174.5 102 80.4
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 4.3e-42 174.5 100 80.0
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 5.6e-42 174.1 99 79.8
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 7.3e-42 173.7 105 81.0
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 9.5e-42 173.3 98 79.6
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 1.2e-41 172.9 94 85.1
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 1.6e-41 172.6 98 79.6
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 2.8e-41 171.8 98 79.6
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 2.8e-41 171.8 101 81.2
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 3.6e-41 171.4 101 81.2
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 4.7e-41 171.0 102 74.5
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 6.2e-41 170.6 98 77.6
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 6.2e-41 170.6 98 78.6
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.8e-40 169.1 94 84.0
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 3.1e-40 168.3 98 76.5
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 1.2e-39 166.4 94 83.0
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 1.5e-39 166.0 101 75.2
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 1.5e-39 166.0 101 75.2
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 3.2e-37 158.3 100 71.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 2.7e-36 155.2 101 72.3
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 8.6e-35 150.2 92 72.8
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 5.6e-34 147.5 74 97.3
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 8.1e-33 143.7 71 94.4
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 8.1e-33 143.7 102 61.8
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.4e-32 142.9 102 61.8
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 2.3e-32 142.1 74 91.9
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 1.5e-31 139.4 99 56.6
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 2.0e-31 139.0 74 87.8
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 3.4e-31 138.3 72 90.3
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.9e-30 135.2 75 84.0
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 3.7e-30 134.8 100 57.0
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 2.4e-29 132.1 82 73.2
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 5.4e-29 131.0 71 85.9
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.6e-28 129.4 71 84.5
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 4.6e-28 127.9 71 85.9
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 6.0e-28 127.5 74 82.4
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.0e-27 126.7 100 54.0
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 3.9e-27 124.8 72 79.2
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 4.3e-26 121.3 69 79.7
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.2e-25 119.8 77 67.5
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 5.8e-23 110.9 104 58.7
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 1.4e-21 106.3 64 81.2
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 2.7e-20 102.1 64 81.2
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.4e-13 79.7 54 64.8
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 5.6e-10 67.8 40 77.5
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 6.2e-09 64.3 42 71.4
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 2.4e-08 62.4 34 85.3
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 5.3e-08 61.2 34 82.4
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 2.2e-06 55.8 36 72.2


User provided reference genes

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