Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G249300 Manihot esculenta HOM05D008545 ORTHO05D010341 2.6e-121 438.7 220 100.0
Thecc.01G347700 Theobroma cacao HOM05D008545 ORTHO05D010341 1.8e-50 203.4 236 48.3
Duzib138G0500 Durio zibethinus HOM05D008545 ORTHO05D010341 6.5e-48 194.9 236 46.6
Atru.chr5.619 Acer truncatum HOM05D008545 ORTHO05D010341 1.2e-46 190.7 237 44.7
Potri.014G094600 Populus trichocarpa HOM05D008545 ORTHO05D010341 4.7e-46 188.7 237 47.3
Gohir.A07G139700 Gossypium hirsutum HOM05D008545 ORTHO05D010341 1.0e-45 187.6 240 45.0
Gohir.D07G144800 Gossypium hirsutum HOM05D008545 ORTHO05D010341 3.0e-45 186.0 240 44.6
Gorai.001G156800 Gossypium raimondii HOM05D008545 ORTHO05D010341 3.0e-45 186.0 240 44.6
GSVIVG01027047001 Vitis vinifera HOM05D008545 ORTHO05D010341 3.0e-45 186.0 229 47.6
Potri.002G167500 Populus trichocarpa HOM05D008545 ORTHO05D010341 2.2e-43 179.9 242 49.2
Eucgr.D02345 Eucalyptus grandis HOM05D008545 ORTHO05D010341 6.3e-43 178.3 239 43.5
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 1.5e-39 167.2 239 42.7
Dinv43892 Davidia involucrata HOM05D008545 ORTHO05D010341 1.4e-37 160.6 204 48.0
MD07G1144400 Malus domestica HOM05D008545 ORTHO05D010341 5.7e-36 155.2 222 40.1
Lj9A592T71 Lonicera japonica HOM05D008545 ORTHO05D010341 4.8e-35 152.1 237 42.6
PGR031G2054 Punica granatum HOM05D008545 ORTHO05D010341 4.8e-35 152.1 239 42.7
Lj7A504G55 Lonicera japonica HOM05D008545 ORTHO05D010341 1.6e-33 147.1 227 42.3
Sabra14G0069200 Salix brachista HOM05D008545 ORTHO05D010341 1.5e-31 140.6 133 58.6
Prupe.2G183300 Prunus persica HOM05D008545 ORTHO05D010341 7.2e-31 138.3 212 39.6
CSS0024380 Camellia sinensis var. sinensis HOM05D008545 ORTHO05D010341 3.4e-28 129.4 242 40.1
Nitab4.5_0002262g0100 Nicotiana tabacum HOM05D008545 ORTHO05D010341 1.8e-26 123.6 201 40.3
RcHm_v2.0_Chr1g0358691 Rosa chinensis HOM05D008545 ORTHO05D010341 2.4e-26 123.2 214 37.9
MSTRG.17319 Avicennia marina HOM05D008545 ORTHO05D010341 1.2e-25 120.9 210 38.6
CANSAT56G3993 Cannabis sativa HOM05D008545 ORTHO05D010341 1.6e-25 120.6 233 36.5
FvH4_7g15870 Fragaria vesca HOM05D008545 ORTHO05D010341 5.9e-25 118.6 216 36.6
FAN06G5050 Fragaria x ananassa HOM05D008545 ORTHO05D010341 5.9e-25 118.6 216 36.1
FAN01G1302 Fragaria x ananassa HOM05D008545 ORTHO05D010341 8.6e-24 114.8 216 36.1
Actinidia20194 Actinidia chinensis HOM05D008545 ORTHO05D010341 2.5e-23 113.2 238 40.8
FAN10G0919 Fragaria x ananassa HOM05D008545 ORTHO05D010341 3.3e-23 112.8 216 36.1
FAN03G1297 Fragaria x ananassa HOM05D008545 ORTHO05D010341 7.3e-23 111.7 216 34.7
FAN10G3148 Fragaria x ananassa HOM05D008545 ORTHO05D010341 7.3e-23 111.7 216 35.6
CAN.G310.5 Capsicum annuum HOM05D008545 ORTHO05D010341 1.0e-21 107.8 218 32.6
Peaxi162Scf00403g00718 Petunia axillaris HOM05D008545 ORTHO05D010341 5.2e-21 105.5 194 36.1
PGSC0003DMG400033878 Solanum tuberosum HOM05D008545 ORTHO05D010341 3.4e-20 102.8 225 29.8
DCAR_016077 Daucus carota HOM05D009167 ORTHO05D010341 3.7e-19 99.4 235 34.0
Solyc05g050240.3 Solanum lycopersicum HOM05D008545 ORTHO05D010341 3.7e-19 99.4 180 32.2
SGA_v2.0_scaffold5G02985 Striga asiatica HOM05D008545 ORTHO05D010341 1.1e-18 97.8 228 35.5
MD01G1075500 Malus domestica HOM05D008545 ORTHO05D010341 1.4e-18 97.4 96 50.0
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 5.4e-18 95.5 252 31.0
Hma1.2p1_0384F.1_g141050 Hydrangea macrophylla HOM05D008545 ORTHO05D010341 4.6e-17 92.4 93 53.8
Nitab4.5_0003779g0040 Nicotiana tabacum HOM05D008545 ORTHO05D010341 1.1e-15 87.8 224 31.7
Sopen05g028690 Solanum pennellii HOM05D008545 ORTHO05D010341 3.6e-14 82.8 134 34.3
COL.COLO4_06334 Corchorus olitorius HOM05D002314 ORTHO05D002538 1.4e-13 80.9 72 54.2
Nn1g01793 Nelumbo nucifera HOM05D008545 ORTHO05D010341 4.4e-12 75.9 166 35.5
FAN06G3211 Fragaria x ananassa HOM05D008545 ORTHO05D010341 7.5e-12 75.1 164 31.1
DCAR_008649 Daucus carota HOM05D008545 ORTHO05D010341 7.0e-10 68.6 256 28.5
Oeu007845.1 Olea europaea HOM05D008545 ORTHO05D010341 1.3e-08 64.3 225 29.8
SalBow3G1564 Salvia bowleyana HOM05D008545 ORTHO05D010341 1.5e-07 60.8 106 39.6
SGA_v2.0_scaffold548G52844 Striga asiatica HOM05D046447 ORTHO05D010341 2.5e-07 60.1 87 41.4
Actinidia10102 Actinidia chinensis HOM05D008545 ORTHO05D010341 3.3e-07 59.7 109 44.0
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 5.6e-07 58.9 85 38.8
CANSAT56G3625 Cannabis sativa HOM05D008545 ORTHO05D010341 2.1e-06 57.0 72 44.4
Migut.B01833 Erythranthe guttata HOM05D008545 ORTHO05D010341 2.1e-06 57.0 84 35.7
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 6.2e-06 55.5 76 40.8
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 8.1e-06 55.1 79 39.2


User provided reference genes

Program Settings