Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 2.8e-182 641.7 304 100.0
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 5.9e-124 448.0 303 70.0
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 9.1e-117 424.1 304 62.8
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.2e-116 423.7 304 62.5
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.6e-116 423.3 304 63.2
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 2.0e-116 422.9 302 63.6
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 3.5e-116 422.2 304 62.5
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 5.9e-116 421.4 302 64.6
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 7.7e-116 421.0 304 64.1
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 1.0e-115 420.6 302 63.9
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.7e-115 419.9 304 63.2
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.7e-115 419.9 304 62.8
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 8.5e-115 417.5 302 63.2
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 8.5e-115 417.5 304 62.5
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 7.2e-114 414.5 304 61.8
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.1e-113 411.4 303 62.0
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 1.4e-112 410.2 303 62.0
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 4.0e-112 408.7 306 60.5
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.2e-112 408.3 303 61.4
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 8.8e-112 407.5 305 60.0
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 8.8e-112 407.5 303 61.4
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 8.8e-112 407.5 303 61.4
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 8.8e-112 407.5 304 60.2
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 8.8e-112 407.5 303 62.4
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.2e-111 407.1 304 60.5
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 1.5e-111 406.8 302 59.6
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 1.5e-111 406.8 302 59.6
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 2.0e-111 406.4 273 65.2
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.0e-111 406.4 303 61.1
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 2.6e-111 406.0 305 61.6
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 4.4e-111 405.2 304 59.9
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 4.4e-111 405.2 312 61.2
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 7.5e-111 404.4 303 61.7
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 2.2e-110 402.9 304 59.5
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 8.3e-110 401.0 302 59.9
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 1.1e-109 400.6 312 60.6
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 3.1e-109 399.1 304 59.5
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 7.0e-109 397.9 301 60.8
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 2.0e-108 396.4 305 59.0
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 2.7e-108 396.0 273 64.1
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 1.0e-107 394.0 305 61.3
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 1.7e-107 393.3 304 59.9
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.3e-107 392.9 292 60.6
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 6.6e-107 391.3 304 59.5
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 8.6e-107 391.0 305 57.4
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 1.9e-106 389.8 274 63.5
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 4.2e-106 388.7 304 59.5
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 2.8e-105 386.0 304 59.5
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 2.8e-105 386.0 284 65.1
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 1.0e-104 384.0 296 58.8
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 1.8e-104 383.3 296 59.1
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 2.3e-104 382.9 304 57.6
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 4.0e-104 382.1 304 56.6
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 1.2e-103 380.6 296 57.8
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 3.4e-103 379.0 296 58.4
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 3.4e-103 379.0 275 61.1
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 4.4e-103 378.6 302 56.6
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 4.4e-103 378.6 304 58.9
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 5.7e-103 378.3 302 59.6
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 5.7e-103 378.3 273 63.0
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 1.3e-102 377.1 273 60.8
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.2e-102 376.3 299 57.5
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 2.8e-102 375.9 278 61.2
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 1.8e-101 373.2 275 59.6
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 2.4e-101 372.9 296 57.4
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 5.4e-101 371.7 277 62.1
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 9.2e-101 370.9 296 58.4
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 2.7e-100 369.4 275 60.4
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 7.8e-100 367.9 321 55.5
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.9e-99 365.9 272 59.6
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.9e-98 363.2 271 59.0
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 4.7e-97 358.6 308 56.2
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 6.1e-97 358.2 280 58.2
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 2.0e-95 353.2 270 56.7
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 2.6e-95 352.8 306 52.0
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 4.4e-95 352.1 308 56.5
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 1.4e-93 347.1 263 61.2
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 2.4e-93 346.3 307 53.4
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 4.6e-92 342.0 279 57.0
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 3.9e-91 339.0 318 52.8
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 1.6e-89 333.6 280 55.0
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 2.1e-89 333.2 292 53.8
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.1e-88 330.9 302 53.6
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 4.0e-88 328.9 244 58.6
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 6.8e-88 328.2 304 53.0
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 2.6e-87 326.2 269 56.9
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.9e-83 312.4 279 54.1
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 9.5e-82 307.8 300 51.3
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 1.2e-81 307.4 303 49.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 2.1e-81 306.6 279 53.0
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 2.1e-81 306.6 212 62.3
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 3.7e-78 295.8 233 56.7
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 7.1e-77 291.6 280 50.0
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 9.2e-77 291.2 239 55.2
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 2.1e-76 290.0 319 48.3
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 1.8e-72 276.9 279 49.1
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 8.4e-70 268.1 275 47.3
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 4.6e-68 262.3 253 49.8
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 4.6e-68 262.3 271 45.4
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 8.7e-67 258.1 190 63.7
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 3.3e-66 256.1 190 63.2
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 3.6e-65 252.7 189 60.3
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 1.5e-63 247.3 292 42.1
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 4.9e-62 242.3 246 45.5
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 5.4e-61 238.8 178 61.8
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 1.3e-59 234.2 312 42.3
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 1.6e-57 227.3 303 39.3
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 6.2e-57 225.3 191 56.0
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 2.9e-54 216.5 190 54.7
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 2.9e-54 216.5 279 40.9
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 3.5e-52 209.5 281 40.2
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.8e-51 207.2 185 54.6
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 5.6e-50 202.2 190 48.9
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 4.8e-49 199.1 317 32.8
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 3.1e-48 196.4 309 33.0
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 6.9e-48 195.3 208 47.1
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.1e-45 188.0 192 48.4
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 2.5e-45 186.8 280 35.7
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.5e-42 177.6 271 36.9
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 4.5e-39 166.0 117 63.2
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 7.6e-39 165.2 134 56.7
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 2.5e-37 160.2 127 54.3
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 3.0e-35 153.3 130 52.3
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.9e-34 150.6 224 37.9
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 1.9e-34 150.6 255 32.9
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 4.3e-34 149.4 137 52.6
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.6e-33 147.5 119 56.3
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.8e-33 146.7 119 55.5
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 5.3e-32 142.5 164 45.7
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 9.0e-32 141.7 103 64.1
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 5.9e-31 139.0 103 60.2
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 8.5e-30 135.2 119 49.6
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 7.9e-28 128.6 95 60.0
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 3.3e-26 123.2 123 48.0
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 2.8e-25 120.2 178 42.1
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 4.5e-23 112.8 142 42.3
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 2.5e-21 107.1 65 75.4
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 3.6e-20 103.2 62 74.2
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 1.4e-19 101.3 73 64.4
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 2.6e-18 97.1 77 55.8
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.5e-15 86.3 63 61.9
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 6.5e-14 82.4 59 52.5
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 7.2e-13 79.0 60 63.3
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 8.0e-12 75.5 74 45.9
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 4.1e-08 63.2 112 30.4
SHI13293 Sapria himalayana HOM05D000590 ORTHO05D006825 2.0e-07 60.8 33 72.7


User provided reference genes

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