Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 9.5e-95 350.1 172 100.0
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.3e-64 250.0 162 74.1
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 4.0e-61 238.4 159 74.8
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 9.0e-61 237.3 161 75.8
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 2.0e-60 236.1 151 78.1
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 2.6e-60 235.7 152 75.0
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.3e-59 233.4 156 73.1
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 4.9e-59 231.5 156 73.7
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.4e-58 229.9 164 69.5
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 1.2e-57 226.9 154 70.8
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 7.8e-57 224.2 153 71.2
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 3.9e-56 221.9 148 75.0
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 2.5e-55 219.2 154 73.4
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 2.5e-55 219.2 154 73.4
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 3.3e-55 218.8 159 69.2
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 2.8e-54 215.7 156 68.6
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 6.2e-54 214.5 165 69.1
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 6.2e-54 214.5 156 68.6
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 1.1e-53 213.8 152 69.1
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 2.6e-52 209.1 152 67.8
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 2.6e-52 209.1 150 70.0
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.4e-52 208.8 158 65.8
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 3.4e-52 208.8 152 67.1
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 1.7e-51 206.5 159 65.4
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 2.9e-51 205.7 150 66.7
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.8e-51 205.3 157 64.3
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 8.4e-51 204.1 157 65.0
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 1.1e-50 203.8 162 63.0
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 1.4e-50 203.4 150 64.7
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 3.2e-50 202.2 156 66.0
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 4.2e-50 201.8 155 61.9
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.2e-50 201.8 154 65.6
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 4.2e-50 201.8 150 65.3
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 5.4e-50 201.4 152 65.8
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 9.3e-50 200.7 151 65.6
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 1.6e-49 199.9 156 63.5
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 1.6e-49 199.9 159 63.5
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 2.1e-49 199.5 166 58.4
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 2.7e-49 199.1 151 64.9
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 3.5e-49 198.7 160 61.9
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 4.6e-49 198.4 160 65.6
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 6.0e-49 198.0 155 64.5
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 1.3e-48 196.8 155 65.2
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 1.8e-48 196.4 153 64.7
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 2.3e-48 196.1 155 65.2
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 2.3e-48 196.1 151 67.5
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 3.0e-48 195.7 154 63.6
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 5.1e-48 194.9 159 59.1
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 5.1e-48 194.9 154 64.3
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 8.7e-48 194.1 155 60.0
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 8.7e-48 194.1 150 62.0
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 1.1e-47 193.7 151 62.9
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 1.9e-47 193.0 150 63.3
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 2.1e-46 189.5 153 59.5
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 3.7e-46 188.7 153 59.5
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 3.7e-46 188.7 151 60.9
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 4.8e-46 188.3 155 58.1
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 6.2e-46 188.0 155 62.6
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.1e-45 187.2 155 58.1
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 1.1e-45 187.2 156 61.5
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 6.9e-45 184.5 160 57.5
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 6.9e-45 184.5 150 60.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 9.0e-45 184.1 154 63.6
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 2.0e-44 183.0 152 61.2
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 1.7e-43 179.9 153 56.9
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 3.8e-43 178.7 154 59.7
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 8.4e-43 177.6 153 58.2
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.9e-42 176.4 139 64.7
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 4.2e-42 175.3 153 56.9
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 5.5e-42 174.9 153 56.2
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 2.7e-41 172.6 127 70.9
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 3.5e-41 172.2 150 54.7
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 1.0e-40 170.6 150 56.0
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 1.8e-40 169.9 154 52.6
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 1.8e-40 169.9 156 55.1
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 3.0e-40 169.1 157 57.3
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 5.1e-40 168.3 155 57.4
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 8.7e-40 167.5 153 55.6
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 1.9e-39 166.4 157 57.3
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 9.6e-39 164.1 160 53.8
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 1.3e-38 163.7 160 53.1
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 2.8e-38 162.5 118 61.9
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 1.1e-37 160.6 160 51.9
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 3.1e-37 159.1 160 53.1
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 4.0e-37 158.7 151 54.3
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 1.2e-36 157.1 160 51.2
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 4.5e-36 155.2 151 50.3
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 7.6e-36 154.5 161 52.2
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 7.6e-36 154.5 161 52.2
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 2.2e-35 152.9 160 50.6
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 2.2e-35 152.9 147 57.1
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 2.9e-35 152.5 160 50.6
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.8e-35 152.1 158 50.6
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 3.8e-35 152.1 160 50.0
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 6.5e-35 151.4 160 50.6
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.1e-34 150.6 154 48.7
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 2.5e-34 149.4 120 60.8
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 6.0e-33 144.8 171 47.4
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 3.0e-32 142.5 159 46.5
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 3.9e-32 142.1 158 46.2
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 8.7e-32 141.0 157 47.8
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 8.7e-32 141.0 150 47.3
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.6e-30 136.7 155 48.4
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 1.1e-29 134.0 158 48.1
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.4e-29 133.7 155 47.7
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 4.1e-29 132.1 151 50.3
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 3.8e-27 125.6 160 43.8
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 8.5e-27 124.4 153 41.2
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 4.2e-26 122.1 151 39.1
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 2.5e-23 112.8 154 38.3
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 2.5e-18 96.3 121 42.1
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 2.4e-13 79.7 60 63.3
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 3.4e-12 75.9 134 33.6
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 8.5e-11 71.2 144 30.6
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 2.7e-09 66.2 142 34.5
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 6.7e-08 61.6 106 36.8
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 7.4e-07 58.2 114 30.7
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 7.4e-07 58.2 58 53.4
DCAR_000664 Daucus carota HOM05D002728 ORTHO05D002874 2.2e-06 56.6 114 28.9
Carub.0004s0383 Capsella rubella HOM05D002728 ORTHO05D002874 2.8e-06 56.2 114 30.7
AT2G24490 Arabidopsis thaliana HOM05D002728 ORTHO05D002874 3.7e-06 55.8 114 28.9
Ah.10g033750 Amaranthus hybridus HOM05D002728 ORTHO05D002874 6.3e-06 55.1 128 28.1


User provided reference genes

Program Settings