Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 2.3e-51 205.3 107 100.0
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 2.7e-23 112.1 70 71.4
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 8.7e-14 80.5 104 47.1
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 5.6e-13 77.8 75 52.0
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 9.6e-13 77.0 66 54.5
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.3e-12 76.6 88 46.6
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.6e-12 76.3 75 52.0
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 2.8e-12 75.5 95 44.2
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 4.8e-12 74.7 66 57.6
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.8e-12 74.7 90 46.7
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 1.1e-11 73.6 71 53.5
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-11 73.6 60 61.7
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.4e-11 73.2 60 60.0
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.8e-11 72.8 60 60.0
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.4e-11 72.4 106 41.5
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 4.0e-11 71.6 65 53.8
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.0e-11 71.6 90 45.6
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 4.0e-11 71.6 90 44.4
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 5.3e-11 71.2 60 56.7
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 6.9e-11 70.9 77 49.4
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 1.2e-10 70.1 61 57.4
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.5e-10 69.7 62 54.8
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.5e-10 69.7 76 48.7
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 2.0e-10 69.3 87 44.8
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.0e-10 69.3 72 47.2
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 2.0e-10 69.3 91 41.8
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 2.0e-10 69.3 58 53.4
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.4e-10 68.6 59 54.2
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 4.5e-10 68.2 78 51.3
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 5.8e-10 67.8 58 56.9
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 5.8e-10 67.8 87 46.0
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 5.8e-10 67.8 86 41.9
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 5.8e-10 67.8 62 50.0
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 7.6e-10 67.4 65 52.3
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 7.6e-10 67.4 67 52.2
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.0e-09 67.0 87 46.0
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 1.0e-09 67.0 75 46.7
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 1.0e-09 67.0 67 49.3
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 1.3e-09 66.6 65 50.8
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.7e-09 66.2 99 37.4
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 2.2e-09 65.9 66 48.5
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 2.2e-09 65.9 78 47.4
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 2.2e-09 65.9 60 51.7
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 2.2e-09 65.9 62 53.2
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 3.8e-09 65.1 65 50.8
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.8e-09 65.1 65 50.8
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 3.8e-09 65.1 79 45.6
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 3.8e-09 65.1 60 51.7
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.9e-09 64.7 65 50.8
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 4.9e-09 64.7 61 50.8
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 6.5e-09 64.3 62 53.2
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 8.4e-09 63.9 58 55.2
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 8.4e-09 63.9 68 52.9
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 1.1e-08 63.5 79 46.8
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.1e-08 63.5 66 47.0
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.4e-08 63.2 74 44.6
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 1.4e-08 63.2 63 47.6
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 1.4e-08 63.2 61 50.8
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 1.4e-08 63.2 74 43.2
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 1.4e-08 63.2 77 46.8
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 1.4e-08 63.2 63 49.2
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 1.9e-08 62.8 59 47.5
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.9e-08 62.8 62 50.0
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.5e-08 62.4 63 50.8
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 2.5e-08 62.4 79 44.3
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 2.5e-08 62.4 59 49.2
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 2.5e-08 62.4 79 43.0
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 2.5e-08 62.4 63 49.2
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 3.2e-08 62.0 77 44.2
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 3.2e-08 62.0 60 50.0
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 3.2e-08 62.0 64 50.0
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.2e-08 62.0 86 40.7
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.2e-08 62.0 62 53.2
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.2e-08 61.6 64 48.4
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 4.2e-08 61.6 90 41.1
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 5.5e-08 61.2 66 48.5
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 7.1e-08 60.8 64 48.4
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 7.1e-08 60.8 109 35.8
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 7.1e-08 60.8 107 37.4
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 9.3e-08 60.5 84 40.5
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 9.3e-08 60.5 84 40.5
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 1.2e-07 60.1 71 39.4
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.6e-07 59.7 88 42.0
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.6e-07 59.7 76 44.7
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.1e-07 59.3 59 47.5
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 2.1e-07 59.3 59 45.8
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.1e-07 59.3 76 42.1
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.1e-07 59.3 64 43.8
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.7e-07 58.9 59 45.8
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 2.7e-07 58.9 121 37.2
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 2.7e-07 58.9 87 43.7
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 3.5e-07 58.5 81 38.3
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 4.6e-07 58.2 65 46.2
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 4.6e-07 58.2 87 39.1
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 4.6e-07 58.2 82 37.8
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 4.6e-07 58.2 111 38.7
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 6.0e-07 57.8 60 50.0
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 6.0e-07 57.8 63 47.6
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 6.0e-07 57.8 59 47.5
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 7.9e-07 57.4 61 47.5
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.0e-06 57.0 81 39.5
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 1.0e-06 57.0 59 45.8
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.0e-06 57.0 78 43.6
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.0e-06 57.0 80 42.5
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.0e-06 57.0 53 56.6
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 1.3e-06 56.6 59 47.5
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 1.3e-06 56.6 59 47.5
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.3e-06 56.6 63 46.0
Thhalv10012120m.g Eutrema salsugineum HOM05D012335 ORTHO05D014421 1.8e-06 56.2 60 45.0
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 1.8e-06 56.2 78 41.0
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.8e-06 56.2 81 40.7
Carub.0001s3819 Capsella rubella HOM05D012335 ORTHO05D014421 2.3e-06 55.8 62 46.8
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 3.0e-06 55.5 59 45.8
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 3.0e-06 55.5 78 39.7
CARHR039040 Cardamine hirsuta HOM05D012335 ORTHO05D014421 3.9e-06 55.1 60 43.3
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 3.9e-06 55.1 62 46.8
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 3.9e-06 55.1 112 35.7
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.9e-06 55.1 62 41.9
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.1e-06 54.7 66 43.9


User provided reference genes

Program Settings