Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 1.1e-131 473.4 244 100.0
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 4.8e-84 315.1 244 68.4
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 1.1e-72 277.3 232 60.8
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.5e-53 213.8 228 50.9
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 2.8e-52 209.5 233 50.2
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 3.1e-51 206.1 304 42.8
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 2.7e-50 203.0 245 46.9
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.7e-49 200.3 233 47.2
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 2.2e-49 199.9 237 45.1
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 3.8e-49 199.1 252 46.8
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 6.5e-49 198.4 233 46.4
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.0e-46 191.0 242 43.0
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 2.3e-46 189.9 233 44.6
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 3.0e-46 189.5 196 54.1
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 3.0e-46 189.5 237 44.7
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 9.8e-45 184.5 240 45.0
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 1.7e-44 183.7 234 45.3
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 3.7e-44 182.6 217 47.0
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 1.1e-43 181.0 234 42.3
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 4.1e-43 179.1 228 43.4
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 5.4e-43 178.7 229 41.9
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 9.1e-43 177.9 230 44.3
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 3.5e-42 176.0 233 43.8
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 4.5e-42 175.6 287 39.4
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 5.9e-42 175.3 231 43.7
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 5.9e-42 175.3 225 43.1
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 1.0e-41 174.5 234 38.0
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 1.3e-41 174.1 233 42.5
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 2.3e-41 173.3 231 41.1
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 2.9e-41 172.9 246 39.8
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 3.8e-41 172.6 228 43.0
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 8.6e-41 171.4 233 42.9
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 4.2e-40 169.1 227 41.4
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 9.5e-40 167.9 242 42.6
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 9.5e-40 167.9 232 41.8
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 4.7e-39 165.6 299 35.1
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.0e-37 160.2 246 39.0
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.6e-37 159.8 245 38.8
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 2.6e-37 159.8 223 39.9
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 2.6e-37 159.8 237 40.5
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 3.4e-37 159.5 256 37.5
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 4.4e-37 159.1 234 38.9
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 1.3e-36 157.5 246 38.6
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 1.3e-36 157.5 164 50.0
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.7e-36 157.1 246 39.0
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 3.7e-36 156.0 229 40.2
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 3.7e-36 156.0 225 40.9
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 4.9e-36 155.6 259 37.5
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 8.3e-36 154.8 234 38.5
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.4e-35 154.1 227 36.6
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 5.4e-35 152.1 227 36.6
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 7.0e-35 151.8 193 46.1
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 9.2e-35 151.4 188 43.6
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 9.2e-35 151.4 219 39.7
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 2.0e-34 150.2 237 40.9
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 2.0e-34 150.2 179 45.3
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 2.0e-34 150.2 186 42.5
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 2.7e-34 149.8 229 38.9
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 2.7e-34 149.8 225 37.3
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 4.5e-34 149.1 226 39.4
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 5.9e-34 148.7 229 39.3
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 7.8e-34 148.3 173 48.0
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.7e-33 147.1 177 44.1
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 1.7e-33 147.1 229 38.9
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 3.8e-33 146.0 229 38.9
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 5.0e-33 145.6 226 37.6
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 5.0e-33 145.6 227 39.6
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.1e-32 144.4 228 39.0
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 1.5e-32 144.1 225 39.6
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 5.6e-32 142.1 226 38.5
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 7.3e-32 141.7 180 43.3
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 7.3e-32 141.7 235 37.0
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 3.6e-31 139.4 345 29.9
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 4.7e-31 139.0 188 42.0
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 4.7e-31 139.0 234 37.2
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 1.4e-30 137.5 133 54.9
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.1e-30 136.3 210 39.0
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 6.8e-30 135.2 195 41.5
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 8.9e-30 134.8 227 37.0
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 1.2e-29 134.4 253 35.2
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 1.2e-29 134.4 180 42.2
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 2.6e-29 133.3 250 36.8
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 7.5e-29 131.7 181 38.7
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 9.8e-29 131.3 195 37.9
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 1.7e-28 130.6 253 34.8
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 4.9e-28 129.0 284 31.7
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 1.3e-25 120.9 229 34.9
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 8.6e-25 118.2 131 45.0
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 1.5e-24 117.5 141 45.4
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 3.3e-24 116.3 117 49.6
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 5.2e-22 109.0 137 43.8
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.2e-21 107.8 163 41.1
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 3.4e-21 106.3 182 36.3
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 4.9e-20 102.4 237 31.2
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 3.2e-19 99.8 163 38.7
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 4.1e-19 99.4 122 41.8
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 5.4e-19 99.0 122 41.8
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 1.2e-18 97.8 182 33.5
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 4.6e-18 95.9 213 28.6
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 6.0e-18 95.5 199 32.2
Ca_05090_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 6.6e-09 65.5 86 39.5
Ca_14995_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 6.6e-09 65.5 86 39.5
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 2.1e-07 60.5 95 35.8
TPR.G444 Trifolium pratense HOM05D007204 ORTHO05D008593 4.0e-06 56.2 52 48.1


User provided reference genes

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