Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.1e-167 593.2 299 100.0
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 6.8e-141 504.2 303 84.5
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 3.4e-132 475.3 299 79.6
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 7.6e-132 474.2 299 76.6
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 3.2e-130 468.8 299 76.9
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.5e-127 459.9 299 77.6
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 8.1e-126 454.1 299 75.3
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 4.0e-125 451.8 299 74.6
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 2.9e-123 445.7 301 74.4
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 6.4e-123 444.5 300 74.3
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.4e-122 442.6 299 76.3
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.1e-121 439.5 299 72.6
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.1e-121 439.5 299 72.6
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 3.5e-121 438.7 298 73.2
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.7e-120 436.4 299 73.6
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 2.3e-120 436.0 299 74.6
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 3.0e-120 435.6 299 73.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 8.7e-120 434.1 298 73.2
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.1e-119 433.7 299 74.2
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 3.3e-119 432.2 287 74.6
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 9.6e-119 430.6 298 72.8
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.6e-118 429.9 299 71.9
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.1e-118 429.5 299 73.2
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.8e-118 429.1 299 72.6
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.8e-118 429.1 299 72.9
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 2.8e-118 429.1 303 73.3
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 3.6e-118 428.7 298 72.1
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.1e-117 427.2 299 72.9
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.8e-117 426.4 299 72.2
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 3.1e-117 425.6 301 72.4
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 2.6e-116 422.5 303 71.0
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 9.9e-116 420.6 299 70.9
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 1.7e-115 419.9 299 69.9
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.8e-115 418.7 300 71.7
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 6.4e-115 417.9 299 69.9
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.1e-114 417.2 300 71.7
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 2.4e-114 416.0 300 71.3
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 4.2e-114 415.2 302 70.9
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 5.4e-114 414.8 299 69.9
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.1e-114 414.5 302 70.2
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.2e-113 413.7 323 66.3
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.6e-113 413.3 280 73.9
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 4.6e-113 411.8 299 69.9
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 2.3e-112 409.5 252 78.6
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 3.0e-112 409.1 314 68.2
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 3.0e-112 409.1 299 69.2
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.9e-112 408.7 291 69.8
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.1e-111 407.1 299 69.6
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.5e-111 406.8 297 68.4
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.9e-111 406.4 299 68.9
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.5e-111 406.0 301 69.4
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.5e-111 406.0 298 68.1
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 2.5e-111 406.0 255 78.0
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 4.3e-111 405.2 301 69.4
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 4.3e-111 405.2 312 67.3
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 5.6e-111 404.8 299 67.6
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 9.6e-111 404.1 299 66.9
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.6e-110 403.3 298 68.5
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.1e-110 402.9 338 64.2
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 2.8e-110 402.5 302 68.9
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.1e-109 400.6 298 68.8
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 1.4e-109 400.2 299 66.2
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 4.0e-109 398.7 255 76.1
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 4.0e-109 398.7 370 59.2
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 2.0e-108 396.4 255 75.7
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.0e-108 396.4 298 66.4
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.5e-108 395.2 302 66.9
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 5.8e-108 394.8 255 74.9
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 5.8e-108 394.8 299 66.9
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 9.9e-108 394.0 301 68.1
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-107 393.7 286 69.9
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.7e-107 393.3 300 67.0
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 1.7e-107 393.3 251 78.1
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.2e-107 392.9 255 75.3
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 3.8e-107 392.1 245 77.6
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 6.4e-107 391.3 297 66.7
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 6.4e-107 391.3 299 68.6
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 8.4e-107 391.0 255 75.3
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 8.4e-107 391.0 302 66.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 1.1e-106 390.6 255 74.5
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.4e-106 390.2 255 73.7
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.4e-106 389.4 299 67.2
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 4.2e-106 388.7 301 66.8
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 5.5e-106 388.3 255 73.3
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 7.1e-106 387.9 232 79.3
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 9.3e-106 387.5 250 78.0
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 9.3e-106 387.5 255 73.7
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.2e-105 387.1 270 71.9
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 2.1e-105 386.3 255 72.9
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 2.1e-105 386.3 255 72.9
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 2.1e-105 386.3 255 72.9
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 2.7e-105 386.0 255 73.3
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 2.7e-105 386.0 251 77.3
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 6.0e-105 384.8 300 68.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 3.3e-103 379.0 298 65.1
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 5.6e-103 378.3 308 64.0
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.3e-102 377.1 290 67.2
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 2.8e-102 375.9 229 79.5
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 3.4e-100 369.0 226 77.9
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 6.5e-99 364.8 305 62.6
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.9e-98 363.2 302 63.9
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.5e-98 362.8 297 65.0
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 4.2e-98 362.1 221 80.5
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 9.3e-98 360.9 224 78.1
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.7e-97 359.4 302 62.3
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.9e-97 357.8 299 63.2
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 6.7e-96 354.8 287 65.2
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 7.4e-95 351.3 300 62.3
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.7e-94 349.0 304 63.5
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.2e-92 344.0 260 69.2
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.4e-92 342.4 262 64.9
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 7.7e-92 341.3 300 61.0
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.4e-90 337.0 299 60.5
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 3.9e-88 328.9 222 73.0
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 8.8e-88 327.8 219 73.5
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 6.3e-86 321.6 226 69.5
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.1e-85 320.9 227 72.2
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.4e-85 320.5 261 65.5
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 3.4e-84 315.8 240 65.8
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 2.5e-82 309.7 225 66.7
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 8.8e-80 301.2 213 69.5
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.0e-79 300.1 205 71.2
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 2.2e-78 296.6 243 63.0
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.9e-72 275.8 292 47.9
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.7e-70 270.4 290 52.1
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 3.8e-67 259.2 230 58.7
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 8.5e-67 258.1 428 40.0
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 6.1e-65 251.9 142 86.6
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.0e-64 251.1 224 54.5
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 5.7e-63 245.4 142 82.4
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.9e-58 230.3 219 52.1
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.9e-58 230.3 219 52.1
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.2e-58 229.2 133 82.0
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 9.8e-55 218.0 167 67.7
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.0e-52 210.3 301 40.9
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.1e-50 204.5 279 40.9
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.2e-50 202.6 249 43.8
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 4.2e-50 202.6 143 69.9
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 3.6e-49 199.5 189 56.1
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 5.4e-45 185.7 112 81.2
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.1e-42 177.9 284 41.2
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.2e-37 159.8 97 80.4
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.7e-35 154.1 97 78.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 2.5e-34 150.2 109 64.2
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.6e-31 140.2 101 76.2
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 3.7e-30 136.3 92 76.1
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 6.4e-30 135.6 81 79.0
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 5.4e-29 132.5 160 51.2
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.3e-26 123.2 161 47.2
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.4e-21 107.8 67 77.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 3.3e-18 96.7 77 61.0
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.8e-09 66.2 176 34.1


User provided reference genes

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