Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9332 Avicennia marina HOM05D001321 ORTHO05D005090 1.2e-81 306.6 173 100.0
ClCG06G018010 Citrullus lanatus HOM05D001321 ORTHO05D005090 4.0e-24 115.5 112 67.0
Ciclev10032492m.g Citrus clementina HOM05D001321 ORTHO05D005090 4.0e-24 115.5 112 64.3
HanXRQChr16g0498051 Helianthus annuus HOM05D001321 ORTHO05D005090 5.2e-24 115.2 112 63.4
Sc10g0010510 Simmondsia chinensis HOM05D001321 ORTHO05D005090 8.8e-24 114.4 112 65.2
MSTRG.11270 Avicennia marina HOM05D001321 ORTHO05D005090 2.0e-23 113.2 112 72.3
CiPaw.11G005700 Carya illinoinensis HOM05D001321 ORTHO05D005090 4.4e-23 112.1 112 70.5
MD06G1140000 Malus domestica HOM05D001321 ORTHO05D005090 4.4e-23 112.1 112 65.2
MD14G1155400 Malus domestica HOM05D001321 ORTHO05D005090 4.4e-23 112.1 112 65.2
Prupe.5G149300 Prunus persica HOM05D001321 ORTHO05D005090 4.4e-23 112.1 112 65.2
QL10p002591 Quercus lobata HOM05D001321 ORTHO05D005090 5.7e-23 111.7 112 69.6
Cpa.g.sc13.93 Carica papaya HOM05D001321 ORTHO05D005090 7.5e-23 111.3 112 70.5
Hma1.2p1_0014F.1_g009270 Hydrangea macrophylla HOM05D001321 ORTHO05D005090 7.5e-23 111.3 112 69.6
TAR374G0437 Trochodendron aralioides HOM05D001321 ORTHO05D005090 7.5e-23 111.3 112 74.1
TAR622G0784 Trochodendron aralioides HOM05D001321 ORTHO05D005090 7.5e-23 111.3 112 65.2
MBI07_g11279_MAGBIO Magnolia biondii HOM05D001321 ORTHO05D005090 9.7e-23 110.9 112 69.6
Cfa018777 Carpinus fangiana HOM05D001321 ORTHO05D005090 1.3e-22 110.5 112 71.4
Hund10146 Selenicereus undatus HOM05D001321 ORTHO05D005090 1.3e-22 110.5 112 73.2
CANSAT80G0056 Cannabis sativa HOM05D001321 ORTHO05D005090 1.7e-22 110.2 112 68.8
CANSAT80G2765 Cannabis sativa HOM05D001321 ORTHO05D005090 1.7e-22 110.2 112 68.8
Gohir.A12G190200 Gossypium hirsutum HOM05D001321 ORTHO05D005090 1.7e-22 110.2 112 69.6
Manes.06G120700 Manihot esculenta HOM05D001321 ORTHO05D005090 1.7e-22 110.2 112 73.2
Manes.14G049700 Manihot esculenta HOM05D001321 ORTHO05D005090 1.7e-22 110.2 112 73.2
Haze_07161 Corylus avellana HOM05D001321 ORTHO05D005090 2.2e-22 109.8 110 70.0
Gohir.A07G050200 Gossypium hirsutum HOM05D001321 ORTHO05D005090 2.2e-22 109.8 112 73.2
Gohir.D07G054600 Gossypium hirsutum HOM05D001321 ORTHO05D005090 2.2e-22 109.8 112 73.2
Gorai.001G057800 Gossypium raimondii HOM05D001321 ORTHO05D005090 2.2e-22 109.8 112 73.2
PGR044G1915 Punica granatum HOM05D001321 ORTHO05D005090 2.2e-22 109.8 112 69.6
Thecc.03G131300 Theobroma cacao HOM05D001321 ORTHO05D005090 2.2e-22 109.8 112 73.2
Atru.chr10.1400 Acer truncatum HOM05D001321 ORTHO05D005090 2.8e-22 109.4 112 73.2
Atru.chr10.1409 Acer truncatum HOM05D001321 ORTHO05D005090 2.8e-22 109.4 112 73.2
Atru.chr6.1821 Acer truncatum HOM05D001321 ORTHO05D005090 2.8e-22 109.4 112 73.2
CsaV3_1G000460 Cucumis sativus L. HOM05D001321 ORTHO05D005090 2.8e-22 109.4 112 68.8
FvH4_5g08540 Fragaria vesca HOM05D001321 ORTHO05D005090 2.8e-22 109.4 112 73.2
FAN18G0520 Fragaria x ananassa HOM05D001321 ORTHO05D005090 2.8e-22 109.4 112 73.2
Gohir.D12G192500 Gossypium hirsutum HOM05D001321 ORTHO05D005090 3.7e-22 109.0 112 68.8
Lj5C95T4 Lonicera japonica HOM05D001321 ORTHO05D005090 4.8e-22 108.6 115 67.0
COL.COLO4_07123 Corchorus olitorius HOM05D001321 ORTHO05D005090 6.3e-22 108.2 112 72.3
FAN04G1421 Fragaria x ananassa HOM05D001321 ORTHO05D005090 6.3e-22 108.2 112 72.3
FAN08G2661 Fragaria x ananassa HOM05D001321 ORTHO05D005090 6.3e-22 108.2 112 72.3
FAN13G3056 Fragaria x ananassa HOM05D001321 ORTHO05D005090 6.3e-22 108.2 112 72.3
Nn3g16419 Nelumbo nucifera HOM05D001321 ORTHO05D005090 6.3e-22 108.2 112 72.3
PSO210G3877 Papaver somniferum HOM05D001321 ORTHO05D005090 6.3e-22 108.2 112 70.5
SalBow5G4576 Salvia bowleyana HOM05D001321 ORTHO05D005090 6.3e-22 108.2 112 68.8
Cc04_g09910 Coffea canephora HOM05D001321 ORTHO05D005090 8.2e-22 107.8 112 72.3
Gorai.008G207000 Gossypium raimondii HOM05D001321 ORTHO05D005090 8.2e-22 107.8 112 68.8
Ah.11g045500 Amaranthus hybridus HOM05D001321 ORTHO05D005090 1.1e-21 107.5 112 58.0
EL10Ac5g11393 Beta vulgaris HOM05D001321 ORTHO05D005090 1.1e-21 107.5 112 63.4
AUR62029587 Chenopodium quinoa HOM05D001321 ORTHO05D005090 1.1e-21 107.5 112 63.4
Eucgr.K02710 Eucalyptus grandis HOM05D001321 ORTHO05D005090 1.1e-21 107.5 112 73.2
DCAR_016383 Daucus carota HOM05D001321 ORTHO05D005090 1.4e-21 107.1 108 69.4
Psat7g036400 Pisum sativum HOM05D001321 ORTHO05D005090 1.4e-21 107.1 112 56.2
PSO832G0025 Papaver somniferum HOM05D001321 ORTHO05D005090 1.8e-21 106.7 112 70.5
CSS0025908 Camellia sinensis var. sinensis HOM05D001321 ORTHO05D005090 2.4e-21 106.3 92 82.6
AUR62038855 Chenopodium quinoa HOM05D001321 ORTHO05D005090 2.4e-21 106.3 112 67.0
Dinv23163 Davidia involucrata HOM05D001321 ORTHO05D005090 2.4e-21 106.3 112 67.9
MELO3C026198.2 Cucumis melo HOM05D001321 ORTHO05D005090 3.1e-21 105.9 112 72.3
Lsat_1_v5_gn_4_81500 Lactuca sativa HOM05D001321 ORTHO05D005090 3.1e-21 105.9 112 69.6
Rhsim12G0176300 Rhododendron simsii HOM05D001321 ORTHO05D005090 3.1e-21 105.9 147 56.5
RcHm_v2.0_Chr7g0189861 Rosa chinensis HOM05D001321 ORTHO05D005090 4.1e-21 105.5 112 66.1
Migut.I00546 Erythranthe guttata HOM05D001321 ORTHO05D005090 5.3e-21 105.1 112 72.3
unitig_61.g26210 Utricularia gibba HOM05D001321 ORTHO05D005090 5.3e-21 105.1 112 68.8
Ca_17560_v3 Cicer arietinum L. HOM05D001321 ORTHO05D005090 7.0e-21 104.8 112 57.1
ECA232G3031 Erigeron canadensis HOM05D001321 ORTHO05D005090 7.0e-21 104.8 112 67.0
Ah.02g114810 Amaranthus hybridus HOM05D001321 ORTHO05D005090 9.1e-21 104.4 112 63.4
Medtr8g096820 Medicago truncatula HOM05D001321 ORTHO05D005090 9.1e-21 104.4 112 61.6
arahy.Tifrunner.gnm1.ann1.F8ILKH Arachis hypogaea HOM05D001321 ORTHO05D005090 1.2e-20 104.0 112 70.5
arahy.Tifrunner.gnm1.ann1.P8MBQ4 Arachis hypogaea HOM05D001321 ORTHO05D005090 1.2e-20 104.0 112 70.5
Hund02450 Selenicereus undatus HOM05D001321 ORTHO05D005090 1.2e-20 104.0 112 72.3
TPR.G12817 Trifolium pratense HOM05D001321 ORTHO05D005090 1.2e-20 104.0 108 60.2
Duzib068G0128 Durio zibethinus HOM05D001321 ORTHO05D005090 1.6e-20 103.6 145 53.1
Sabra12G0059700 Salix brachista HOM05D001321 ORTHO05D005090 2.0e-20 103.2 112 70.5
Potri.012G100400 Populus trichocarpa HOM05D001321 ORTHO05D005090 2.6e-20 102.8 112 70.5
TWI14G1281 Tripterygium wilfordii HOM05D001321 ORTHO05D005090 3.5e-20 102.4 112 66.1
Aqoxy5G03312 Aquilegia oxysepala HOM05D001321 ORTHO05D005090 4.5e-20 102.1 112 69.6
Glyma.05G204300 Glycine max HOM05D001321 ORTHO05D005090 5.9e-20 101.7 112 70.5
Phvul.002G286100 Phaseolus vulgaris HOM05D001321 ORTHO05D005090 5.9e-20 101.7 112 70.5
CiPaw.12G044400 Carya illinoinensis HOM05D001321 ORTHO05D005090 7.7e-20 101.3 112 70.5
Duzib205G0217 Durio zibethinus HOM05D001321 ORTHO05D005090 7.7e-20 101.3 112 70.5
VMungo0251G2091 Vigna mungo HOM05D001321 ORTHO05D005090 7.7e-20 101.3 112 70.5
Glyma.08G011600 Glycine max HOM05D001321 ORTHO05D005090 1.3e-19 100.5 112 69.6
Lalb_Chr07g0183511 Lupinus albus HOM05D001321 ORTHO05D005090 1.3e-19 100.5 112 69.6
Potri.015G098600 Populus trichocarpa HOM05D001321 ORTHO05D005090 1.7e-19 100.1 112 69.6
CAN.G861.3 Capsicum annuum HOM05D001321 ORTHO05D005090 2.9e-19 99.4 112 68.8
Actinidia08884 Actinidia chinensis HOM05D001321 ORTHO05D005090 3.8e-19 99.0 113 70.8
Lj4g0011684 Lotus japonicus HOM05D001321 ORTHO05D005090 5.0e-19 98.6 112 69.6
Lalb_Chr12g0202261 Lupinus albus HOM05D001321 ORTHO05D005090 5.0e-19 98.6 112 69.6
Sp5g13330 Schrenkiella parvula HOM05D001321 ORTHO05D005090 5.0e-19 98.6 112 68.8
Sed0021621 Sechium edule HOM05D001321 ORTHO05D005090 5.0e-19 98.6 112 69.6
TWI23G0950 Tripterygium wilfordii HOM05D001321 ORTHO05D005090 1.1e-18 97.4 112 63.4
Lj9C480T6 Lonicera japonica HOM05D001321 ORTHO05D005090 1.5e-18 97.1 52 80.8
AL5G28110 Arabidopsis lyrata HOM05D001321 ORTHO05D005090 1.9e-18 96.7 112 68.8
AT3G48680 Arabidopsis thaliana HOM05D001321 ORTHO05D005090 1.9e-18 96.7 112 68.8
Carub.0005s1482 Capsella rubella HOM05D001321 ORTHO05D005090 1.9e-18 96.7 112 68.8
THA.LOC104798942 Tarenaya hassleriana HOM05D001321 ORTHO05D005090 1.9e-18 96.7 112 68.8
BolC9t53850H Brassica oleracea HOM05D001321 ORTHO05D005090 2.5e-18 96.3 119 65.5
CARHR157440 Cardamine hirsuta HOM05D001321 ORTHO05D005090 3.2e-18 95.9 112 67.9
Aa31LG1G18530 Aethionema arabicum HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
Aa31LG4G17250 Aethionema arabicum HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
AL8G40570 Arabidopsis lyrata HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
BcaB02g09755 Brassica carinata HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
BcaB04g19922 Brassica carinata HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
BcaB07g29690 Brassica carinata HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
BcaC01g06929 Brassica carinata HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
BcaC03g18209 Brassica carinata HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
BcaC07g39350 Brassica carinata HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
A06p19030 Brassica napus HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
A06p30140 Brassica napus HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
C08p23680 Brassica napus HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
C09p09380 Brassica napus HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
BolC8t49998H Brassica oleracea HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
Os02g0508000 Oryza sativa ssp. japonica HOM05D001321 ORTHO05D005090 4.2e-18 95.5 111 69.4
Peaxi162Scf00089g00122 Petunia axillaris HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
Sp2g26590 Schrenkiella parvula HOM05D001321 ORTHO05D005090 4.2e-18 95.5 112 67.9
CARHR277360 Cardamine hirsuta HOM05D001321 ORTHO05D005090 7.2e-18 94.7 112 67.9
Thhalv10004812m.g Eutrema salsugineum HOM05D001321 ORTHO05D005090 7.2e-18 94.7 112 67.9
Thhalv10010651m.g Eutrema salsugineum HOM05D001321 ORTHO05D005090 7.2e-18 94.7 112 67.9
Nitab4.5_0003367g0100 Nicotiana tabacum HOM05D001321 ORTHO05D005090 7.2e-18 94.7 112 67.0
Nitab4.5_0010179g0040 Nicotiana tabacum HOM05D001321 ORTHO05D005090 7.2e-18 94.7 112 67.0
Carub.0008s2421 Capsella rubella HOM05D001321 ORTHO05D005090 9.4e-18 94.4 112 67.9
PGSC0003DMG402015205 Solanum tuberosum HOM05D001321 ORTHO05D005090 9.4e-18 94.4 112 67.0
BcaC04g23334 Brassica carinata HOM05D001321 ORTHO05D005090 1.2e-17 94.0 115 67.0
BolC3t18547H Brassica oleracea HOM05D001321 ORTHO05D005090 1.2e-17 94.0 115 67.0
Solyc03g019720.4 Solanum lycopersicum HOM05D001321 ORTHO05D005090 1.2e-17 94.0 112 67.0
Sopen03g029900 Solanum pennellii HOM05D001321 ORTHO05D005090 1.2e-17 94.0 112 67.0
BcaB01g00789 Brassica carinata HOM05D001321 ORTHO05D005090 1.6e-17 93.6 112 67.0
Actinidia36820 Actinidia chinensis HOM05D001321 ORTHO05D005090 2.1e-17 93.2 113 69.0
A09p08300 Brassica napus HOM05D001321 ORTHO05D005090 2.1e-17 93.2 108 69.4
C03p62930 Brassica napus HOM05D001321 ORTHO05D005090 2.1e-17 93.2 108 69.4
BraA06t24986Z Brassica rapa HOM05D001321 ORTHO05D005090 2.1e-17 93.2 108 69.4
BraA06t25965Z Brassica rapa HOM05D001321 ORTHO05D005090 2.1e-17 93.2 108 69.4
BraA09t36480Z Brassica rapa HOM05D001321 ORTHO05D005090 2.1e-17 93.2 108 69.4
SEGI_03681 Sequoiadendron giganteum HOM05D001321 ORTHO05D005090 2.1e-17 93.2 112 43.8
Zm00001eb241770 Zea mays HOM05D001321 ORTHO05D005090 2.7e-17 92.8 111 67.6
AT5G63510 Arabidopsis thaliana HOM05D001321 ORTHO05D005090 4.7e-17 92.0 108 69.4
Oeu061145.1 Olea europaea HOM05D001321 ORTHO05D005090 4.7e-17 92.0 101 69.3
HPP92_008069 Vanilla planifolia HOM05D001321 ORTHO05D005090 4.7e-17 92.0 112 65.2
SGA_v2.0_scaffold40G15549 Striga asiatica HOM05D001321 ORTHO05D005090 6.1e-17 91.7 44 93.2
Zm00001eb180920 Zea mays HOM05D001321 ORTHO05D005090 6.1e-17 91.7 111 66.7
Nn4g22278 Nelumbo nucifera HOM05D001321 ORTHO05D005090 5.2e-16 88.6 102 71.6
Pp3c1_7500 Physcomitrium patens HOM05D001321 ORTHO05D005090 1.2e-15 87.4 111 39.6
vmacro16729 Vaccinium macrocarpon HOM05D001321 ORTHO05D005090 1.5e-15 87.0 44 86.4
ATR0626G207 Amborella trichopoda HOM05D001321 ORTHO05D005090 2.0e-15 86.7 44 88.6
Duzib084G1430 Durio zibethinus HOM05D001321 ORTHO05D005090 2.0e-15 86.7 112 64.3
Pp3c7_19540 Physcomitrium patens HOM05D001321 ORTHO05D005090 1.8e-13 80.1 115 44.3
Mapoly0036s0116 Marchantia polymorpha HOM05D001321 ORTHO05D005090 4.2e-10 68.9 112 53.6
BcaB05g22996 Brassica carinata HOM05D001321 ORTHO05D005090 2.2e-06 56.6 43 65.1
Cre06.g293850 Chlamydomonas reinhardtii HOM05D001321 ORTHO05D005090 3.7e-06 55.8 98 32.7


User provided reference genes

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