Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 2.4e-116 422.2 214 100.0
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.1e-100 370.2 199 93.0
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 3.9e-98 361.7 198 91.9
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.9e-97 359.4 199 90.5
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 9.6e-97 357.1 199 89.9
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.1e-96 355.9 199 89.4
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 8.2e-96 354.0 199 88.4
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.8e-95 352.8 197 89.8
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 2.4e-95 352.4 197 89.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.1e-95 352.1 199 87.9
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 5.9e-94 347.8 199 87.9
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 5.9e-94 347.8 199 88.4
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 7.6e-94 347.4 201 86.1
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.6e-94 347.4 198 86.9
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.0e-93 347.1 199 87.4
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.0e-93 347.1 199 87.9
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.2e-93 345.9 199 86.9
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 3.8e-93 345.1 198 85.9
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.5e-93 344.4 199 85.9
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 6.5e-93 344.4 199 85.9
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 8.4e-93 344.0 199 86.4
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.1e-92 343.6 199 85.9
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.4e-92 343.2 200 84.5
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.4e-92 343.2 199 86.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 1.9e-92 342.8 199 85.9
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 3.2e-92 342.0 199 84.9
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 4.2e-92 341.7 200 84.0
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 9.3e-92 340.5 201 85.1
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 9.3e-92 340.5 199 85.9
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.2e-91 340.1 199 85.9
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 4.6e-91 338.2 199 83.9
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 4.6e-91 338.2 199 85.9
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 6.1e-91 337.8 198 86.4
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 7.9e-91 337.4 199 85.9
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 7.9e-91 337.4 225 79.6
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.3e-90 336.7 199 85.4
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 3.0e-90 335.5 197 85.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 6.7e-90 334.3 199 86.4
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 6.7e-90 334.3 205 82.9
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.5e-89 333.2 199 85.4
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.5e-89 333.2 199 84.4
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 2.5e-89 332.4 200 84.5
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 3.3e-89 332.0 199 82.9
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 3.3e-89 332.0 199 83.4
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.7e-89 331.3 199 84.9
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.7e-89 331.3 199 84.9
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 9.7e-89 330.5 199 81.9
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.2e-88 329.3 199 82.9
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.2e-88 329.3 199 84.9
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.2e-88 329.3 192 88.5
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 3.7e-88 328.6 198 85.4
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 4.8e-88 328.2 199 83.9
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 4.8e-88 328.2 199 84.9
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 4.8e-88 328.2 199 82.4
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 6.3e-88 327.8 198 82.8
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 6.3e-88 327.8 199 84.4
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 6.3e-88 327.8 199 82.9
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.2e-88 327.4 199 81.4
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 8.2e-88 327.4 199 82.9
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.1e-87 327.0 201 82.6
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.8e-87 326.2 199 83.4
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.4e-87 325.9 199 83.4
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 5.3e-87 324.7 199 83.4
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 9.0e-87 323.9 199 83.4
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 9.0e-87 323.9 199 82.4
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.0e-86 322.8 199 81.9
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.0e-86 322.8 201 78.1
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 2.6e-86 322.4 207 81.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 3.4e-86 322.0 213 77.9
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 3.4e-86 322.0 193 83.9
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.3e-85 320.1 199 81.9
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.3e-85 320.1 199 80.4
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.7e-85 319.7 197 82.7
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.2e-85 319.3 199 81.4
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 2.9e-85 318.9 199 81.4
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.9e-85 318.9 201 78.6
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 8.5e-85 317.4 199 81.9
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.1e-84 317.0 206 80.1
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.5e-84 315.8 200 78.5
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.5e-84 315.8 197 82.2
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 3.2e-84 315.5 223 75.8
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.2e-84 315.5 198 79.3
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.5e-84 314.7 203 76.8
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 7.2e-84 314.3 198 80.3
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 7.2e-84 314.3 199 80.4
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.1e-83 312.8 199 79.9
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.7e-83 312.4 199 79.9
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 2.7e-83 312.4 198 78.3
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.6e-83 311.6 199 79.9
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 7.9e-83 310.8 224 75.0
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.4e-82 310.1 199 79.4
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.4e-82 310.1 199 79.4
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.4e-82 310.1 199 78.9
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.4e-82 310.1 197 81.2
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.4e-82 310.1 199 79.9
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 6.7e-82 307.8 212 74.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 6.7e-82 307.8 202 77.7
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.1e-81 307.0 199 80.4
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 1.5e-81 306.6 199 80.4
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.5e-81 306.6 199 78.4
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.5e-81 306.6 199 78.9
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 7.4e-81 304.3 226 71.2
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.8e-80 302.4 190 81.1
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 4.8e-80 301.6 212 73.6
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.8e-79 299.7 198 77.3
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 3.1e-79 298.9 196 78.6
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 5.3e-79 298.1 195 80.5
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 5.3e-79 298.1 201 78.1
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.5e-78 296.6 204 74.0
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 7.7e-78 294.3 198 74.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.3e-77 293.5 198 74.7
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.8e-77 292.0 198 75.3
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 6.5e-77 291.2 196 78.1
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.4e-76 290.0 209 71.3
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 4.2e-76 288.5 190 77.4
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 3.6e-75 285.4 198 73.2
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 4.7e-75 285.0 212 69.8
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 6.1e-75 284.6 197 74.6
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 6.1e-75 284.6 170 83.5
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 3.9e-74 282.0 200 73.5
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 3.9e-74 282.0 196 69.9
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 6.7e-74 281.2 197 74.6
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 8.8e-74 280.8 201 70.1
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 8.8e-74 280.8 201 70.1
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 1.5e-73 280.0 252 63.1
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.5e-73 280.0 198 73.2
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.5e-73 280.0 198 72.2
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.5e-73 280.0 198 73.2
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.5e-73 280.0 198 72.2
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.6e-73 279.3 203 71.9
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 4.4e-73 278.5 198 72.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 9.7e-73 277.3 188 75.5
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 9.7e-73 277.3 198 73.2
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.7e-72 276.6 197 73.6
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 2.2e-72 276.2 196 69.9
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 6.3e-72 274.6 209 68.4
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.1e-71 272.3 202 69.8
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 5.3e-71 271.6 197 73.1
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.2e-70 270.4 198 72.2
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 2.0e-70 269.6 197 72.6
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.0e-70 269.6 156 85.3
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.6e-70 269.2 144 91.0
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 3.5e-70 268.9 198 72.7
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.3e-69 266.9 198 71.2
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 3.6e-67 258.8 197 69.0
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 3.0e-66 255.8 197 68.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 4.0e-66 255.4 207 68.6
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 8.8e-66 254.2 177 71.2
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 9.7e-65 250.8 193 67.9
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.7e-64 250.0 146 82.2
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 6.3e-64 248.1 188 69.1
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 9.5e-44 181.0 198 52.5
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.3e-42 176.4 152 57.2
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.3e-40 170.6 106 79.2
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.7e-40 169.1 148 58.8
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.7e-30 136.3 74 93.2
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 8.6e-29 131.3 93 71.0
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-28 129.8 147 49.7
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.1e-27 126.7 134 54.5
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.5e-25 120.6 76 77.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 3.3e-20 102.8 164 41.5
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 4.9e-16 89.0 184 34.2
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.3e-12 76.3 40 85.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 5.6e-12 75.5 40 77.5
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.2e-11 74.3 57 66.7
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 6.2e-11 72.0 40 77.5
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 2.6e-09 66.6 136 33.8
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 2.6e-09 66.6 43 67.4
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 2.2e-08 63.5 105 33.3
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.4e-07 60.8 55 58.2
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 9.3e-07 58.2 32 90.6


User provided reference genes

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