Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 3.1e-95 352.1 212 100.0
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 5.9e-54 214.9 213 64.3
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 8.8e-50 201.1 212 61.8
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 1.4e-44 183.7 210 56.7
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 2.0e-41 173.3 210 52.4
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 2.2e-40 169.9 205 53.2
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 1.3e-37 160.6 212 49.1
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 3.8e-37 159.1 212 50.9
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 5.0e-37 158.7 214 50.9
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.2e-36 154.8 214 50.5
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 3.6e-35 152.5 214 52.3
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 4.7e-35 152.1 204 46.1
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 6.1e-35 151.8 201 48.8
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.0e-34 151.0 210 47.1
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.0e-34 151.0 210 47.1
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 4.0e-34 149.1 202 52.5
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 4.0e-34 149.1 201 47.3
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.2e-34 148.7 210 44.8
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.2e-34 148.7 210 44.8
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 5.2e-34 148.7 214 50.0
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 1.7e-32 143.7 210 41.4
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 3.7e-32 142.5 212 48.6
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.7e-32 142.5 201 48.3
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 8.2e-32 141.4 215 47.9
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.8e-31 140.2 200 47.5
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.8e-31 140.2 201 49.8
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.1e-31 139.4 198 53.0
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 1.2e-30 137.5 210 47.6
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.0e-30 136.7 207 47.3
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 3.5e-30 136.0 210 49.0
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 4.5e-30 135.6 202 46.5
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 4.5e-30 135.6 201 48.3
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 5.9e-30 135.2 212 45.8
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.3e-29 134.0 201 47.8
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.3e-29 134.0 214 50.5
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 1.3e-29 134.0 204 54.4
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 2.2e-29 133.3 200 53.5
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 2.2e-29 133.3 212 45.8
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 2.2e-29 133.3 212 45.8
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 3.8e-29 132.5 202 56.9
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 6.5e-29 131.7 210 46.2
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.1e-28 131.0 204 57.8
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.5e-28 130.6 210 50.0
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 2.5e-28 129.8 211 45.5
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 2.5e-28 129.8 213 48.8
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 3.2e-28 129.4 200 53.0
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.2e-28 129.0 212 46.2
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 9.4e-28 127.9 203 55.7
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 9.4e-28 127.9 201 46.3
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.2e-27 127.5 202 56.4
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.2e-27 127.5 200 48.5
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.6e-27 127.1 205 55.6
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.6e-27 127.1 205 55.6
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 3.6e-27 125.9 205 55.1
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 4.7e-27 125.6 202 56.4
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.1e-27 125.2 202 55.9
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.1e-27 125.2 205 55.1
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 8.0e-27 124.8 200 47.0
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 8.0e-27 124.8 204 54.9
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.4e-26 124.0 205 55.1
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.4e-26 124.0 198 48.0
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 1.8e-26 123.6 191 55.5
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.8e-26 123.6 205 55.1
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.3e-26 123.2 205 54.6
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 3.0e-26 122.9 204 45.1
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 4.0e-26 122.5 200 51.5
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 1.2e-25 120.9 202 46.5
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 1.2e-25 120.9 202 46.5
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.2e-25 120.9 203 40.4
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.5e-25 120.6 198 53.0
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.5e-25 120.6 200 53.0
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 2.0e-25 120.2 202 44.1
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.0e-25 120.2 200 45.0
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 2.6e-25 119.8 201 43.3
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 9.8e-25 117.9 201 43.3
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.7e-24 117.1 200 44.0
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.2e-24 116.7 202 42.6
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.7e-24 115.9 210 39.0
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 3.7e-24 115.9 199 45.7
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.7e-24 115.9 202 38.1
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 4.8e-24 115.5 205 53.7
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.1e-23 114.4 205 53.7
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.4e-23 114.0 215 43.3
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-23 114.0 200 44.5
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.8e-23 113.6 210 38.6
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.8e-23 113.6 200 52.0
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 4.1e-23 112.5 202 42.6
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 7.0e-23 111.7 200 44.0
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 7.0e-23 111.7 200 44.0
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.0e-22 110.2 200 43.0
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 2.0e-22 110.2 210 39.0
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 2.7e-22 109.8 204 42.2
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.7e-22 109.8 202 40.1
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 3.5e-22 109.4 149 41.6
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 7.7e-22 108.2 149 43.6
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 7.7e-22 108.2 204 40.2
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 1.7e-21 107.1 148 44.6
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.7e-21 107.1 205 50.2
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 3.8e-21 105.9 210 39.0
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 8.5e-21 104.8 208 41.3
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.1e-20 104.4 196 38.3
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 5.5e-20 102.1 206 36.4
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 5.5e-20 102.1 200 44.5
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.5e-20 102.1 202 41.6
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 9.4e-20 101.3 201 52.7
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 9.4e-20 101.3 151 42.4
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.1e-19 100.1 201 42.8
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.1e-19 100.1 201 42.8
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 2.7e-19 99.8 201 52.7
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 2.7e-19 99.8 201 52.2
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 3.6e-19 99.4 199 48.7
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 3.6e-19 99.4 198 47.5
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 8.0e-19 98.2 198 51.5
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 1.0e-18 97.8 198 36.4
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.0e-18 97.8 198 47.5
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 1.8e-18 97.1 201 48.8
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 3.0e-18 96.3 197 46.2
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 4.0e-18 95.9 197 37.1
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 1.2e-17 94.4 200 36.0
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 1.5e-17 94.0 190 39.5
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 2.0e-17 93.6 201 37.8
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.0e-17 93.6 191 43.5
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 7.5e-17 91.7 198 35.4
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 9.8e-17 91.3 201 50.2
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 1.7e-16 90.5 199 45.7
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 1.7e-16 90.5 196 40.8
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.2e-16 90.1 191 44.5
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 2.2e-16 90.1 191 39.3
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.7e-16 89.4 201 37.8
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 3.7e-16 89.4 200 36.5
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 3.7e-16 89.4 203 40.4
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.9e-16 89.0 201 36.8
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.3e-16 88.6 191 42.4
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 8.3e-16 88.2 200 34.5
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.1e-15 87.8 201 36.3
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.1e-15 87.8 205 46.8
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.1e-15 87.8 199 48.7
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.1e-15 87.8 190 49.5
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.8e-15 87.0 192 53.1
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 3.1e-15 86.3 200 36.0
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.0e-15 85.1 201 36.8
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.2e-14 84.3 200 34.0
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-14 84.3 193 38.9
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.6e-14 84.0 198 34.3
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 3.5e-14 82.8 201 35.3
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 4.5e-14 82.4 189 35.4
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 4.5e-14 82.4 201 35.3
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 5.9e-14 82.0 215 44.7
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 7.7e-14 81.6 217 33.2
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 1.3e-13 80.9 200 35.0
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.7e-13 80.5 197 36.5
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 1.7e-13 80.5 214 48.1
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 3.8e-13 79.3 197 34.5
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 5.0e-13 79.0 196 36.2
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 5.0e-13 79.0 126 53.2
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 8.6e-13 78.2 205 28.8
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.1e-12 77.8 201 36.8
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.2e-11 74.3 204 28.4
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.6e-11 73.9 201 34.3
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.6e-11 73.9 197 40.6
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.1e-11 73.6 209 49.3
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 2.1e-11 73.6 112 63.4
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 2.8e-11 73.2 144 34.7
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.6e-11 72.8 199 33.2
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 6.1e-11 72.0 215 47.9
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.8e-10 70.5 185 36.8
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 2.3e-10 70.1 96 75.0
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 6.8e-10 68.6 201 32.3
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 6.8e-10 68.6 132 31.8
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 8.9e-10 68.2 203 46.3
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 7.5e-09 65.1 94 55.3
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 2.2e-08 63.5 197 38.1
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.9e-08 63.2 109 38.5
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 1.4e-07 60.8 203 43.3
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.8e-07 60.5 203 32.0
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.8e-07 60.5 107 35.5
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 7.0e-07 58.5 147 53.1
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 2.0e-06 57.0 88 45.5
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 2.0e-06 57.0 88 45.5
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 2.0e-06 57.0 89 56.2


User provided reference genes

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