Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7005 Avicennia marina HOM05D001812 ORTHO05D001874 2.7e-74 282.0 147 100.0
Dinv10349 Davidia involucrata HOM05D001812 ORTHO05D001874 5.3e-38 161.4 145 57.2
SalBow8G1247 Salvia bowleyana HOM05D001812 ORTHO05D001874 7.0e-38 161.0 147 58.5
SalBow8G1672 Salvia bowleyana HOM05D001812 ORTHO05D001874 7.0e-38 161.0 147 58.5
Oeu050274.1 Olea europaea HOM05D001812 ORTHO05D001874 1.2e-37 160.2 149 58.4
Migut.M01640 Erythranthe guttata HOM05D001812 ORTHO05D001874 4.2e-35 151.8 153 57.5
vmacro09635 Vaccinium macrocarpon HOM05D001812 ORTHO05D001874 2.7e-34 149.1 146 54.1
PGSC0003DMG400022270 Solanum tuberosum HOM05D001812 ORTHO05D001874 3.0e-33 145.6 148 54.1
Oeu017986.1 Olea europaea HOM05D001812 ORTHO05D001874 6.7e-33 144.4 147 53.7
Cc05_g15110 Coffea canephora HOM05D001812 ORTHO05D001874 2.0e-32 142.9 146 55.5
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 2.6e-32 142.5 147 55.8
Sopen07g033900 Solanum pennellii HOM05D001812 ORTHO05D001874 1.3e-31 140.2 148 53.4
CSS0009424 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 1.7e-31 139.8 145 48.3
CSS0010806 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 2.2e-31 139.4 145 51.0
CSS0025887 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 2.2e-31 139.4 145 51.0
Nitab4.5_0026002g0010 Nicotiana tabacum HOM05D001812 ORTHO05D001874 4.8e-31 138.3 148 52.0
CAN.G623.25 Capsicum annuum HOM05D001812 ORTHO05D001874 1.1e-30 137.1 148 53.4
Peaxi162Scf00139g01125 Petunia axillaris HOM05D001812 ORTHO05D001874 1.1e-30 137.1 145 52.4
Solyc07g065690.3 Solanum lycopersicum HOM05D001812 ORTHO05D001874 1.1e-30 137.1 148 52.7
Dinv40874 Davidia involucrata HOM05D001812 ORTHO05D001874 1.4e-30 136.7 147 53.7
MD03G1029300 Malus domestica HOM05D001812 ORTHO05D001874 2.4e-30 136.0 151 51.7
Lj1C892G3 Lonicera japonica HOM05D001827 ORTHO05D001790 3.1e-30 135.6 153 52.9
Nitab4.5_0004583g0120 Nicotiana tabacum HOM05D001812 ORTHO05D001874 3.1e-30 135.6 148 50.7
Sabra16G0242200 Salix brachista HOM05D001812 ORTHO05D001874 3.1e-30 135.6 146 50.7
CiPaw.12G139300 Carya illinoinensis HOM05D001812 ORTHO05D001874 4.1e-30 135.2 147 51.7
Potri.001G369300 Populus trichocarpa HOM05D001812 ORTHO05D001874 7.0e-30 134.4 147 49.7
Haze_09843 Corylus avellana HOM05D001812 ORTHO05D001874 1.2e-29 133.7 148 54.1
SGA_v2.0_scaffold168G38569 Striga asiatica HOM05D001812 ORTHO05D001874 7.7e-29 131.0 147 49.7
GSVIVG01014708001 Vitis vinifera HOM05D001812 ORTHO05D001874 7.7e-29 131.0 149 49.0
MD11G1032600 Malus domestica HOM05D001812 ORTHO05D001874 1.0e-28 130.6 149 51.0
Prupe.6G025400 Prunus persica HOM05D001812 ORTHO05D001874 1.0e-28 130.6 148 50.7
FvH4_3g42740 Fragaria vesca HOM05D001812 ORTHO05D001874 4.2e-27 125.2 147 49.7
FAN11G0011 Fragaria x ananassa HOM05D001812 ORTHO05D001874 5.5e-27 124.8 147 49.7
Manes.15G069800 Manihot esculenta HOM05D001812 ORTHO05D001874 9.4e-27 124.0 146 47.3
Atru.chr2.3711_Atru.chr2.3712 Acer truncatum HOM05D001812 ORTHO05D001874 1.6e-26 123.2 148 50.0
RcHm_v2.0_Chr5g0076471 Rosa chinensis HOM05D001812 ORTHO05D001874 2.1e-26 122.9 147 48.3
TAR629G2670 Trochodendron aralioides HOM05D001812 ORTHO05D001874 2.1e-26 122.9 145 48.3
Hund23031 Selenicereus undatus HOM05D001812 ORTHO05D001874 1.8e-25 119.8 145 44.8
QL08p003558 Quercus lobata HOM05D001812 ORTHO05D001874 2.3e-25 119.4 147 46.9
FAN16G0254 Fragaria x ananassa HOM05D001812 ORTHO05D001874 4.0e-25 118.6 147 47.6
EL10Ac4g07525 Beta vulgaris HOM05D001812 ORTHO05D001874 5.2e-25 118.2 145 46.2
Manes.15G058500 Manihot esculenta HOM05D001812 ORTHO05D001874 6.8e-25 117.9 146 45.2
Ciclev10008145m.g Citrus clementina HOM05D001812 ORTHO05D001874 8.8e-25 117.5 152 47.4
PGR031G2924 Punica granatum HOM05D001812 ORTHO05D001874 1.2e-24 117.1 149 45.0
DCAR_022609 Daucus carota HOM05D001812 ORTHO05D001874 1.5e-24 116.7 154 45.5
Duzib213G0767 Durio zibethinus HOM05D001812 ORTHO05D001874 2.0e-24 116.3 150 47.3
Hma1.2p1_1516F.1_g288380 Hydrangea macrophylla HOM05D001812 ORTHO05D001874 2.0e-24 116.3 146 46.6
Nn1g07548 Nelumbo nucifera HOM05D001812 ORTHO05D001874 2.6e-24 115.9 148 44.6
FAN21G0625 Fragaria x ananassa HOM05D001812 ORTHO05D001874 7.5e-24 114.4 147 44.9
PSO210G2565 Papaver somniferum HOM05D001812 ORTHO05D001874 1.3e-23 113.6 146 45.9
MBI14_g13532_MAGBIO Magnolia biondii HOM05D001812 ORTHO05D001874 4.8e-23 111.7 146 46.6
AUR62017146 Chenopodium quinoa HOM05D001812 ORTHO05D001874 6.3e-23 111.3 147 47.6
MBI14_g08890_MAGBIO Magnolia biondii HOM05D001812 ORTHO05D001874 6.3e-23 111.3 146 46.6
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 1.4e-22 110.2 149 46.3
PSO210G7102 Papaver somniferum HOM05D001812 ORTHO05D001874 1.4e-22 110.2 147 45.6
AUR62035661 Chenopodium quinoa HOM05D001812 ORTHO05D001874 1.8e-22 109.8 145 46.2
MBI14_g08896_MAGBIO Magnolia biondii HOM05D001812 ORTHO05D001874 1.8e-22 109.8 145 46.2
Gohir.A01G092800 Gossypium hirsutum HOM05D001812 ORTHO05D001874 2.4e-22 109.4 148 45.9
Lsat_1_v5_gn_9_88880 Lactuca sativa HOM05D001812 ORTHO05D001874 3.1e-22 109.0 150 46.7
Gohir.D01G077300 Gossypium hirsutum HOM05D001812 ORTHO05D001874 7.0e-22 107.8 147 44.9
Gorai.002G101800 Gossypium raimondii HOM05D001812 ORTHO05D001874 1.6e-21 106.7 147 46.3
ECA240G1712 Erigeron canadensis HOM05D001812 ORTHO05D001874 7.7e-21 104.4 150 45.3
Thecc.07G010200 Theobroma cacao HOM05D001812 ORTHO05D001874 1.0e-20 104.0 150 46.0
Eucgr.F02038 Eucalyptus grandis HOM05D001812 ORTHO05D001874 1.7e-20 103.2 146 42.5
CANSAT11G0060 Cannabis sativa HOM05D001812 ORTHO05D001874 5.0e-20 101.7 160 39.4
Glyma.02G301500 Glycine max HOM05D001812 ORTHO05D001874 1.1e-19 100.5 146 44.5
Ah.06g180980 Amaranthus hybridus HOM05D001812 ORTHO05D001874 2.5e-19 99.4 147 43.5
Sp7g24580 Schrenkiella parvula HOM05D001812 ORTHO05D001874 3.3e-19 99.0 155 41.3
Thhalv10025213m.g Eutrema salsugineum HOM05D001812 ORTHO05D001874 5.5e-19 98.2 155 41.9
BcaNung02398 Brassica carinata HOM05D001812 ORTHO05D001874 7.2e-19 97.8 153 43.1
CARHR234200 Cardamine hirsuta HOM05D001812 ORTHO05D001874 7.2e-19 97.8 155 41.9
MELO3C024953.2 Cucumis melo HOM05D001812 ORTHO05D001874 7.2e-19 97.8 149 43.0
Sed0005604 Sechium edule HOM05D001812 ORTHO05D001874 7.2e-19 97.8 149 42.3
CsaV3_7G011510 Cucumis sativus L. HOM05D001812 ORTHO05D001874 1.6e-18 96.7 149 43.0
Glyma.08G331100 Glycine max HOM05D001812 ORTHO05D001874 1.6e-18 96.7 146 45.9
LjContig00081g0020581 Lotus japonicus HOM05D001812 ORTHO05D001874 1.6e-18 96.7 157 40.1
THA.LOC104811674 Tarenaya hassleriana HOM05D001812 ORTHO05D001874 1.6e-18 96.7 150 40.0
LjContig00272g0004277 Lotus japonicus HOM05D001812 ORTHO05D001874 2.1e-18 96.3 157 40.8
LjContig00272g0005348 Lotus japonicus HOM05D001812 ORTHO05D001874 2.1e-18 96.3 156 39.7
HanXRQChr03g0080341 Helianthus annuus HOM05D001812 ORTHO05D001874 3.6e-18 95.5 148 41.2
Lalb_Chr17g0348981 Lupinus albus HOM05D001812 ORTHO05D001874 3.6e-18 95.5 147 42.9
Aqoxy1G04279 Aquilegia oxysepala HOM05D001812 ORTHO05D001874 6.1e-18 94.7 168 40.5
ClCG09G021440 Citrullus lanatus HOM05D001812 ORTHO05D001874 8.0e-18 94.4 149 40.9
AT4G26620 Arabidopsis thaliana HOM05D001812 ORTHO05D001874 1.0e-17 94.0 156 43.6
AL7G26270 Arabidopsis lyrata HOM05D001812 ORTHO05D001874 1.4e-17 93.6 156 43.6
VMungo0647G1240 Vigna mungo HOM05D001812 ORTHO05D001874 1.4e-17 93.6 159 41.5
VMungo0540G0218 Vigna mungo HOM05D001812 ORTHO05D001874 1.8e-17 93.2 145 42.8
Ca_06403_v3 Cicer arietinum L. HOM05D001812 ORTHO05D001874 2.3e-17 92.8 148 41.9
A01p17860 Brassica napus HOM05D001812 ORTHO05D001874 3.0e-17 92.4 157 42.7
arahy.Tifrunner.gnm1.ann1.QRIG84 Arachis hypogaea HOM05D001812 ORTHO05D001874 5.2e-17 91.7 155 42.6
TPR.G8581 Trifolium pratense HOM05D001812 ORTHO05D001874 5.2e-17 91.7 155 40.0
TWI38G0291 Tripterygium wilfordii HOM05D001812 ORTHO05D001874 5.2e-17 91.7 148 40.5
BraA01t01742Z Brassica rapa HOM05D001812 ORTHO05D001874 6.8e-17 91.3 157 42.7
TAR517G0010 Trochodendron aralioides HOM05D001812 ORTHO05D001874 6.8e-17 91.3 120 45.0
arahy.Tifrunner.gnm1.ann1.5Z2HMN Arachis hypogaea HOM05D001812 ORTHO05D001874 2.0e-16 89.7 155 43.2
BcaC09g50634 Brassica carinata HOM05D001812 ORTHO05D001874 3.4e-16 89.0 162 41.4
Phvul.006G058900 Phaseolus vulgaris HOM05D001812 ORTHO05D001874 7.5e-16 87.8 145 44.1
Glyma.18G075500 Glycine max HOM05D001812 ORTHO05D001874 9.8e-16 87.4 147 42.9
C01p22660 Brassica napus HOM05D001812 ORTHO05D001874 1.3e-15 87.0 162 41.4
arahy.Tifrunner.gnm1.ann1.51KSCF Arachis hypogaea HOM05D001812 ORTHO05D001874 3.7e-15 85.5 146 37.0
Carub.0007s1425 Capsella rubella HOM05D001812 ORTHO05D001874 3.7e-15 85.5 156 42.3
Glyma.14G012700 Glycine max HOM05D001812 ORTHO05D001874 4.9e-15 85.1 164 38.4
HPP92_018822 Vanilla planifolia HOM05D001812 ORTHO05D001874 6.3e-15 84.7 148 37.8
Medtr5g096090 Medicago truncatula HOM05D001812 ORTHO05D001874 1.8e-14 83.2 156 38.5
Psat2g006840 Pisum sativum HOM05D001812 ORTHO05D001874 3.1e-14 82.4 148 37.8
CDE10G0553 Ceratophyllum demersum HOM05D001812 ORTHO05D001874 1.6e-13 80.1 147 34.7
Phvul.008G280000 Phaseolus vulgaris HOM05D001812 ORTHO05D001874 1.6e-13 80.1 147 36.7
Zm00001eb189050 Zea mays HOM05D001812 ORTHO05D001874 1.6e-13 80.1 147 34.7
arahy.Tifrunner.gnm1.ann1.QNP3C2 Arachis hypogaea HOM05D001812 ORTHO05D001874 2.0e-13 79.7 146 35.6
Medtr3g007930 Medicago truncatula HOM05D001812 ORTHO05D001874 2.0e-13 79.7 150 38.0
CARHR269270 Cardamine hirsuta HOM05D001812 ORTHO05D001874 2.7e-13 79.3 148 39.2
CDE10G1281 Ceratophyllum demersum HOM05D001812 ORTHO05D001874 2.7e-13 79.3 147 34.7
ATR0751G131 Amborella trichopoda HOM05D001812 ORTHO05D001874 4.5e-13 78.6 157 36.3
Os02g0725100 Oryza sativa ssp. japonica HOM05D001812 ORTHO05D001874 4.5e-13 78.6 153 37.3
AT5G55900 Arabidopsis thaliana HOM05D001812 ORTHO05D001874 3.8e-12 75.5 148 37.2
Sp6g17750 Schrenkiella parvula HOM05D001812 ORTHO05D001874 1.9e-11 73.2 149 37.6
SHI26480 Sapria himalayana HOM05D001812 ORTHO05D001874 5.6e-11 71.6 146 34.2
AL8G31460 Arabidopsis lyrata HOM05D001812 ORTHO05D001874 7.3e-11 71.2 150 36.7
Lalb_Chr15g0082221 Lupinus albus HOM05D001812 ORTHO05D001874 7.3e-11 71.2 147 37.4
BcaC04g20190 Brassica carinata HOM05D001812 ORTHO05D001874 8.0e-10 67.8 147 32.7
C09p46850 Brassica napus HOM05D001812 ORTHO05D001874 8.0e-10 67.8 147 32.7
BolC9t57535H Brassica oleracea HOM05D001812 ORTHO05D001874 8.0e-10 67.8 147 32.7
Thhalv10015242m.g Eutrema salsugineum HOM05D001812 ORTHO05D001874 1.2e-08 63.9 151 37.7
Zm00001eb253200 Zea mays HOM05D001812 ORTHO05D001874 5.8e-08 61.6 195 29.2
COL.COLO4_07720 Corchorus olitorius HOM05D001812 ORTHO05D001874 1.3e-07 60.5 110 40.0
SEGI_04030 Sequoiadendron giganteum HOM05D001812 ORTHO05D001874 1.3e-07 60.5 158 32.3
BcaB08g35956 Brassica carinata HOM05D001812 ORTHO05D001874 2.9e-07 59.3 149 30.2
A10p13090 Brassica napus HOM05D001812 ORTHO05D001874 1.1e-06 57.4 147 30.6
BraA10t43405Z Brassica rapa HOM05D001812 ORTHO05D001874 1.1e-06 57.4 147 30.6
QL08p003626 Quercus lobata HOM05D001812 ORTHO05D001874 3.2e-06 55.8 94 39.4
ATR0824G158 Amborella trichopoda HOM05D001812 ORTHO05D001874 5.4e-06 55.1 152 29.6
Sc07g0002280 Simmondsia chinensis HOM05D001812 ORTHO05D001874 5.4e-06 55.1 107 35.5
Mapoly0014s0020 Marchantia polymorpha HOM05D001812 ORTHO05D001874 9.2e-06 54.3 156 30.1


User provided reference genes

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