Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 3.0e-121 439.1 332 100.0
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 2.4e-94 349.7 332 85.2
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 2.7e-90 336.3 331 79.2
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.4e-89 334.0 333 78.1
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 2.5e-83 313.2 341 79.2
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 3.2e-83 312.8 314 76.8
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 4.2e-83 312.4 316 71.2
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 9.4e-83 311.2 341 76.0
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 1.6e-82 310.5 331 72.5
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.1e-82 310.1 316 79.7
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 1.8e-81 307.0 331 72.2
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 4.0e-81 305.8 332 73.8
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 2.0e-80 303.5 319 72.1
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 2.0e-80 303.5 326 78.8
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.3e-79 300.8 332 63.0
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 1.7e-79 300.4 313 72.2
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.7e-79 300.4 319 78.1
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.3e-79 298.5 334 74.9
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 6.3e-79 298.5 325 78.2
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.2e-79 298.1 316 77.8
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.2e-79 298.1 316 77.8
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 1.8e-78 297.0 319 69.9
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 3.1e-78 296.2 327 69.4
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.3e-78 295.4 319 76.8
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 7.0e-78 295.0 331 75.8
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 1.2e-77 294.3 324 69.8
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.2e-77 294.3 331 77.3
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.7e-77 293.1 329 76.3
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 3.5e-77 292.7 309 80.6
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.5e-77 292.4 329 76.9
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 7.7e-77 291.6 324 78.4
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 7.7e-77 291.6 334 71.0
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 7.7e-77 291.6 332 60.2
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.7e-76 290.4 332 69.6
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 2.2e-76 290.0 319 69.9
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 6.5e-76 288.5 316 77.8
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 8.5e-76 288.1 326 74.8
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.9e-75 287.0 322 68.3
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.9e-75 287.0 319 77.7
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 2.5e-75 286.6 316 76.9
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.2e-75 286.2 326 72.7
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 4.2e-75 285.8 322 74.8
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.1e-74 283.5 332 67.5
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.1e-74 283.5 332 67.5
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 2.1e-74 283.5 330 73.3
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 3.6e-74 282.7 321 67.6
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 6.1e-74 282.0 312 66.7
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.0e-73 279.3 319 77.1
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 6.8e-73 278.5 332 69.3
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 6.8e-73 278.5 327 70.6
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.2e-72 277.7 316 69.3
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 2.6e-72 276.6 332 69.0
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 5.7e-72 275.4 346 57.8
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 7.5e-72 275.0 332 63.9
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 9.8e-72 274.6 335 74.9
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 9.8e-72 274.6 312 65.4
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 9.8e-72 274.6 335 59.4
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.3e-71 274.2 332 73.5
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.7e-71 273.9 335 72.5
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 2.2e-71 273.5 321 72.6
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 4.8e-71 272.3 303 71.0
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 8.3e-71 271.6 318 72.6
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 8.3e-71 271.6 325 68.3
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-70 271.2 318 73.0
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.1e-70 271.2 321 65.7
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.1e-70 271.2 315 75.6
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-70 270.8 318 72.6
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.8e-70 270.4 327 64.2
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 2.4e-70 270.0 321 65.7
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 3.1e-70 269.6 321 65.4
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 5.4e-70 268.9 329 61.4
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 5.4e-70 268.9 329 61.4
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 7.0e-70 268.5 332 66.3
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 9.1e-70 268.1 334 74.3
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 1.6e-69 267.3 332 62.3
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 2.0e-69 266.9 322 66.1
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 2.7e-69 266.5 322 65.8
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 4.5e-69 265.8 328 65.9
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 4.5e-69 265.8 318 65.1
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 7.7e-69 265.0 325 72.3
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.0e-68 264.6 328 64.3
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.0e-68 264.6 326 69.0
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.3e-68 264.2 322 65.5
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 2.3e-68 263.5 332 64.8
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 2.9e-68 263.1 321 64.8
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 2.9e-68 263.1 321 64.8
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 6.5e-68 261.9 328 70.4
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 6.5e-68 261.9 319 59.2
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.9e-67 260.4 299 79.6
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.5e-67 260.0 312 64.4
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.5e-67 260.0 332 64.2
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.2e-66 257.7 322 64.3
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.2e-66 257.7 299 77.3
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 6.1e-66 255.4 310 76.8
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.4e-65 254.2 321 69.5
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.4e-65 254.2 302 77.2
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 6.8e-65 251.9 329 63.8
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.2e-64 251.1 310 74.2
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 2.6e-64 250.0 303 76.2
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 8.3e-63 245.0 306 73.9
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.7e-60 237.3 293 70.3
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.1e-59 234.6 286 76.9
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 9.5e-59 231.5 244 68.9
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.2e-58 231.1 311 55.9
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 2.1e-58 230.3 314 67.2
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 6.1e-58 228.8 295 64.4
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.0e-58 228.4 319 59.2
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 2.3e-57 226.9 311 67.5
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.3e-55 221.1 312 64.1
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 2.9e-55 219.9 236 63.6
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 1.9e-51 207.2 332 53.9
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.2e-50 204.5 159 71.1
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 4.7e-50 202.6 312 61.5
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 8.0e-50 201.8 360 46.9
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 3.1e-49 199.9 217 56.7
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 3.1e-49 199.9 218 73.9
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.5e-48 197.6 294 55.1
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 2.0e-48 197.2 216 61.6
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.1e-46 191.4 293 59.0
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 2.4e-46 190.3 311 65.6
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-45 187.2 174 68.4
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 6.0e-45 185.7 174 67.2
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 3.9e-44 183.0 174 56.9
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 5.0e-44 182.6 174 56.9
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 5.6e-43 179.1 311 52.1
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 2.8e-42 176.8 212 87.7
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 6.2e-42 175.6 174 63.8
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 3.1e-41 173.3 329 55.6
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 9.9e-40 168.3 311 58.8
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.7e-39 167.5 304 58.9
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.2e-39 167.2 164 61.0
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 2.4e-38 163.7 133 66.9
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.2e-37 161.4 121 74.4
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.6e-37 161.0 186 69.9
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 4.6e-37 159.5 311 47.6
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.2e-34 151.4 119 70.6
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 2.8e-34 150.2 315 47.3
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 5.2e-33 146.0 228 63.2
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 2.6e-32 143.7 113 67.3
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 4.4e-32 142.9 148 54.1
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 4.4e-32 142.9 185 51.9
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-31 141.0 218 47.7
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 6.4e-31 139.0 157 58.6
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 9.2e-30 135.2 209 73.7
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.7e-28 131.0 152 54.6
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 1.9e-27 127.5 152 55.3
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 9.0e-25 118.6 160 51.2
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-24 118.2 158 55.7
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 2.6e-24 117.1 152 63.8
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.2e-21 108.2 183 69.9
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 3.5e-21 106.7 146 45.9
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.0e-21 105.9 92 65.2
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.6e-20 102.4 92 63.0
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.6e-20 102.4 92 63.0
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-17 95.1 85 63.5
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 4.0e-17 93.2 96 53.1
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-14 85.1 88 54.5
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 2.3e-12 77.4 96 42.7
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 2.5e-11 73.9 67 61.2
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.5e-11 73.9 67 61.2
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.6e-10 71.2 349 31.8
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-10 70.1 52 59.6
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 2.9e-07 60.5 61 54.1
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 2.5e-06 57.4 99 44.4
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.1e-06 55.8 62 51.6
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 9.3e-06 55.5 163 51.5


User provided reference genes

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