Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.439 Avicennia marina HOM05D002829 ORTHO05D003124 7.5e-118 427.2 212 100.0
MSTRG.8064 Avicennia marina HOM05D002829 ORTHO05D003124 1.0e-82 310.5 210 74.3
Migut.K01135 Erythranthe guttata HOM05D002829 ORTHO05D003124 1.4e-68 263.5 207 69.1
unitig_699.g19969 Utricularia gibba HOM05D002829 ORTHO05D003124 5.5e-44 181.8 197 50.3
Thecc.01G239500 Theobroma cacao HOM05D002829 ORTHO05D003124 2.6e-41 172.9 218 47.2
Oeu011726.1 Olea europaea HOM05D002829 ORTHO05D003124 3.7e-40 169.1 185 53.0
Duzib264G0406 Durio zibethinus HOM05D002829 ORTHO05D003124 1.1e-39 167.5 217 47.5
Cpa.g.sc38.55 Carica papaya HOM05D002829 ORTHO05D003124 1.8e-39 166.8 218 46.8
Manes.08G099100 Manihot esculenta HOM05D002829 ORTHO05D003124 3.1e-39 166.0 218 48.2
MBI07_g42014_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010528 5.3e-39 165.2 202 49.5
Sed0013476 Sechium edule HOM05D002829 ORTHO05D003124 2.0e-38 163.3 215 46.0
unitig_747.g21104 Utricularia gibba HOM05D002829 ORTHO05D003124 3.5e-38 162.5 172 48.8
Gohir.A11G059300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.0e-37 161.0 182 51.1
Gohir.D11G063400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.0e-37 161.0 194 49.0
Sabra01G0049600 Salix brachista HOM05D002829 ORTHO05D003124 1.0e-37 161.0 184 50.0
MBI11_g17276_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 1.3e-37 160.6 226 46.5
MD16G1144900 Malus domestica HOM05D002829 ORTHO05D003124 1.3e-37 160.6 178 53.9
Gorai.007G068500 Gossypium raimondii HOM05D002829 ORTHO05D003124 1.7e-37 160.2 182 51.1
Eucgr.J01660 Eucalyptus grandis HOM05D002829 ORTHO05D003124 2.2e-37 159.8 234 45.7
Duzib147G1098 Durio zibethinus HOM05D002829 ORTHO05D003124 8.5e-37 157.9 209 48.3
THA.LOC104820537 Tarenaya hassleriana HOM05D002829 ORTHO05D003124 8.5e-37 157.9 207 45.4
QL03p048302 Quercus lobata HOM05D002829 ORTHO05D003124 1.1e-36 157.5 233 45.1
Sed0018664 Sechium edule HOM05D002829 ORTHO05D003124 1.1e-36 157.5 181 50.3
TAR622G0550 Trochodendron aralioides HOM05D002829 ORTHO05D003124 1.1e-36 157.5 201 49.3
Potri.003G160000 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.5e-36 157.1 198 48.5
CiPaw.05G097800 Carya illinoinensis HOM05D002829 ORTHO05D003124 1.9e-36 156.8 237 43.0
CiPaw.06G111500 Carya illinoinensis HOM05D002829 ORTHO05D003124 1.9e-36 156.8 254 42.1
MD13G1134300 Malus domestica HOM05D002829 ORTHO05D003124 3.2e-36 156.0 182 51.1
TWI75G0707 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 3.2e-36 156.0 218 46.8
Ciclev10029923m.g Citrus clementina HOM05D002829 ORTHO05D003124 5.5e-36 155.2 202 45.0
Cfa009474 Carpinus fangiana HOM05D002829 ORTHO05D003124 7.2e-36 154.8 207 47.8
Potri.001G070700 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.2e-35 154.1 200 47.5
TWI18G0126 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 2.7e-35 152.9 205 47.3
TWI36G1156 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 2.7e-35 152.9 194 48.5
Haze_12531 Corylus avellana HOM05D002829 ORTHO05D003124 4.7e-35 152.1 207 46.9
Prupe.1G211200 Prunus persica HOM05D002829 ORTHO05D003124 6.1e-35 151.8 189 50.8
Sabra03G0116300 Salix brachista HOM05D002829 ORTHO05D003124 1.0e-34 151.0 198 47.5
ClCG10G013080 Citrullus lanatus HOM05D002829 ORTHO05D003124 1.8e-34 150.2 207 46.4
PSO017G0067 Papaver somniferum HOM05D002829 ORTHO05D003124 3.0e-34 149.4 260 40.0
PGR102G0495 Punica granatum HOM05D002829 ORTHO05D003124 2.0e-33 146.7 215 45.6
FAN07G1465 Fragaria x ananassa HOM05D002829 ORTHO05D003124 4.4e-33 145.6 204 44.6
CDE09G0437 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 9.7e-33 144.4 187 47.1
FvH4_4g22140 Fragaria vesca HOM05D002829 ORTHO05D003124 9.7e-33 144.4 205 44.4
FAN12G1147 Fragaria x ananassa HOM05D002829 ORTHO05D003124 9.7e-33 144.4 205 44.4
RcHm_v2.0_Chr4g0428381 Rosa chinensis HOM05D002829 ORTHO05D003124 1.7e-32 143.7 197 44.7
Atru.chr12.1478 Acer truncatum HOM05D002829 ORTHO05D003124 4.8e-32 142.1 207 45.9
CSS0000234 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 4.8e-32 142.1 230 39.6
CSS0019210 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 8.2e-32 141.4 230 40.0
Aa31sc50G50 Aethionema arabicum HOM05D002829 ORTHO05D003124 1.1e-31 141.0 191 45.5
BcaC05g26825 Brassica carinata HOM05D002829 ORTHO05D003124 1.1e-31 141.0 214 41.6
BolC5t31417H Brassica oleracea HOM05D002829 ORTHO05D003124 1.1e-31 141.0 214 41.6
FAN17G0858 Fragaria x ananassa HOM05D002829 ORTHO05D003124 1.1e-31 141.0 205 42.9
Oeu010270.1 Olea europaea HOM05D002829 ORTHO05D003124 4.1e-31 139.0 161 50.9
MELO3C026752.2 Cucumis melo HOM05D002829 ORTHO05D003124 5.3e-31 138.7 208 44.2
A09p37870 Brassica napus HOM05D002829 ORTHO05D003124 9.1e-31 137.9 209 41.6
BraA09t39299Z Brassica rapa HOM05D002829 ORTHO05D003124 9.1e-31 137.9 209 41.6
PSO478G2462 Papaver somniferum HOM05D002829 ORTHO05D003124 2.0e-30 136.7 212 42.9
ATR0582G260 Amborella trichopoda HOM05D002829 ORTHO05D003124 7.7e-30 134.8 226 38.1
C05p27000 Brassica napus HOM05D002829 ORTHO05D003124 7.7e-30 134.8 214 40.7
HanXRQChr17g0568751 Helianthus annuus HOM05D002829 ORTHO05D003124 1.0e-29 134.4 198 41.4
COL.COLO4_16099 Corchorus olitorius HOM05D002829 ORTHO05D003124 2.2e-29 133.3 189 46.0
BcaB07g32428 Brassica carinata HOM05D002829 ORTHO05D003124 2.9e-29 132.9 211 39.8
BolC3t19731H Brassica oleracea HOM05D002829 ORTHO05D003124 2.9e-29 132.9 202 41.6
AT1G28190 Arabidopsis thaliana HOM05D002829 ORTHO05D003124 3.8e-29 132.5 196 41.8
Thhalv10008463m.g Eutrema salsugineum HOM05D002829 ORTHO05D003124 3.8e-29 132.5 192 43.8
AL1G41730 Arabidopsis lyrata HOM05D002829 ORTHO05D003124 6.5e-29 131.7 209 41.1
CDE02G1175 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 1.1e-28 131.0 218 41.7
A08p25820 Brassica napus HOM05D002829 ORTHO05D003124 1.5e-28 130.6 181 43.6
BraA08t34537Z Brassica rapa HOM05D002829 ORTHO05D003124 1.5e-28 130.6 181 43.6
CARHR027680 Cardamine hirsuta HOM05D002829 ORTHO05D003124 1.9e-28 130.2 213 39.4
BcaC01g00013 Brassica carinata HOM05D002829 ORTHO05D003124 2.5e-28 129.8 202 41.1
C03p74800 Brassica napus HOM05D002829 ORTHO05D003124 2.5e-28 129.8 202 41.1
Lsat_1_v5_gn_4_1720 Lactuca sativa HOM05D002829 ORTHO05D003124 1.6e-27 127.1 202 39.1
Sp1g24380 Schrenkiella parvula HOM05D002829 ORTHO05D003124 6.1e-27 125.2 206 39.8
Carub.0001s2663 Capsella rubella HOM05D002829 ORTHO05D003124 1.0e-26 124.4 202 38.6
HPP92_000320 Vanilla planifolia HOM05D002829 ORTHO05D003124 1.8e-26 123.6 180 40.0
BcaB03g12129 Brassica carinata HOM05D002829 ORTHO05D003124 2.6e-25 119.8 182 42.3
Zm00001eb113580 Zea mays HOM05D002829 ORTHO05D003124 9.8e-25 117.9 167 38.3
HPP92_020117 Vanilla planifolia HOM05D002829 ORTHO05D003124 1.2e-22 110.9 171 40.9
ATR0745G071 Amborella trichopoda HOM05D002829 ORTHO05D003124 3.6e-19 99.4 167 38.9
SEGI_29550 Sequoiadendron giganteum HOM05D002829 ORTHO05D003124 8.0e-19 98.2 188 34.6
Thecc.09G249600 Theobroma cacao HOM05D002829 ORTHO05D003124 1.0e-18 97.8 172 37.2
Atru.chr3.2771 Acer truncatum HOM05D002829 ORTHO05D003124 8.8e-18 94.7 173 38.2
AT5G12340 Arabidopsis thaliana HOM05D002829 ORTHO05D003124 1.2e-17 94.4 161 38.5
Duzib168G0270 Durio zibethinus HOM05D002829 ORTHO05D003124 1.2e-17 94.4 179 36.9
Duzib265G0001 Durio zibethinus HOM05D002829 ORTHO05D003124 1.2e-17 94.4 169 37.3
SGA_v2.0_scaffold29G12253 Striga asiatica HOM05D002829 ORTHO05D003124 1.5e-17 94.0 149 40.9
Duzib150G0976 Durio zibethinus HOM05D002829 ORTHO05D003124 2.0e-17 93.6 169 37.3
COL.COLO4_06524 Corchorus olitorius HOM05D002829 ORTHO05D003124 2.6e-17 93.2 179 36.9
Cpa.g.sc482.1 Carica papaya HOM05D002829 ORTHO05D003124 3.4e-17 92.8 172 34.9
Gohir.A05G071400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 4.4e-17 92.4 171 37.4
Lsat_1_v5_gn_2_33560 Lactuca sativa HOM05D002829 ORTHO05D003124 5.7e-17 92.0 180 37.8
Carub.0006s1085 Capsella rubella HOM05D002829 ORTHO05D003124 9.8e-17 91.3 191 35.6
Gorai.009G075400 Gossypium raimondii HOM05D002829 ORTHO05D003124 9.8e-17 91.3 171 36.8
TPR.G8464 Trifolium pratense HOM05D002829 ORTHO05D003124 9.8e-17 91.3 181 34.8
Gohir.D05G074300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.3e-16 90.9 171 36.8
Manes.02G139900 Manihot esculenta HOM05D002829 ORTHO05D003124 1.3e-16 90.9 178 36.0
Peaxi162Scf00156g00044 Petunia axillaris HOM05D002829 ORTHO05D003124 1.3e-16 90.9 172 34.9
RcHm_v2.0_Chr5g0050661 Rosa chinensis HOM05D002829 ORTHO05D003124 1.7e-16 90.5 168 38.1
AL6G23140 Arabidopsis lyrata HOM05D002829 ORTHO05D003124 2.2e-16 90.1 161 37.3
Thhalv10015959m.g Eutrema salsugineum HOM05D002829 ORTHO05D003124 3.7e-16 89.4 163 36.8
Nitab4.5_0000456g0140 Nicotiana tabacum HOM05D002829 ORTHO05D003124 4.9e-16 89.0 175 39.4
Oeu025903.1 Olea europaea HOM05D002829 ORTHO05D003124 4.9e-16 89.0 175 36.0
Sopen04g025670 Solanum pennellii HOM05D002829 ORTHO05D003124 8.3e-16 88.2 177 35.0
Oeu039578.1 Olea europaea HOM05D002829 ORTHO05D003124 1.1e-15 87.8 178 35.4
Sed0010124 Sechium edule HOM05D002829 ORTHO05D003124 1.1e-15 87.8 192 34.4
PGSC0003DMG400016928 Solanum tuberosum HOM05D002829 ORTHO05D003124 1.1e-15 87.8 175 36.0
Ciclev10016678m.g Citrus clementina HOM05D002829 ORTHO05D003124 1.4e-15 87.4 190 33.7
Nn4g22068 Nelumbo nucifera HOM05D002829 ORTHO05D003124 1.4e-15 87.4 79 54.4
Solyc04g057830.1 Solanum lycopersicum HOM05D002829 ORTHO05D003124 1.4e-15 87.4 177 34.5
Duzib170G0965 Durio zibethinus HOM05D002829 ORTHO05D003124 2.4e-15 86.7 174 34.5
Nitab4.5_0000276g0100 Nicotiana tabacum HOM05D002829 ORTHO05D003124 4.1e-15 85.9 178 37.1
PGR102G2796 Punica granatum HOM05D002829 ORTHO05D003124 5.4e-15 85.5 191 35.6
Psat0s3829g0080 Pisum sativum HOM05D002829 ORTHO05D003124 7.0e-15 85.1 171 37.4
Cfa009847 Carpinus fangiana HOM05D002829 ORTHO05D003124 9.2e-15 84.7 174 35.1
CiPaw.14G113800 Carya illinoinensis HOM05D002829 ORTHO05D003124 9.2e-15 84.7 176 35.8
Lsat_1_v5_gn_9_13041 Lactuca sativa HOM05D002829 ORTHO05D003124 2.0e-14 83.6 186 33.9
Phvul.006G030300 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 2.0e-14 83.6 166 34.9
Peaxi162Scf00741g00031 Petunia axillaris HOM05D002829 ORTHO05D003124 2.7e-14 83.2 176 33.0
SEGI_01737 Sequoiadendron giganteum HOM05D002829 ORTHO05D003124 2.7e-14 83.2 181 32.0
Eucgr.B03728 Eucalyptus grandis HOM05D002829 ORTHO05D003124 3.5e-14 82.8 178 34.8
Prupe.4G267600 Prunus persica HOM05D002829 ORTHO05D003124 4.5e-14 82.4 174 34.5
PGR119G1580 Punica granatum HOM05D002829 ORTHO05D003124 4.5e-14 82.4 194 34.0
Lj1P286T7 Lonicera japonica HOM05D002829 ORTHO05D003124 5.9e-14 82.0 149 38.3
Cc01_g05450 Coffea canephora HOM05D002829 ORTHO05D003124 7.7e-14 81.6 177 32.8
Os01g0952900 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 1.0e-13 81.3 203 31.0
MD03G1167500 Malus domestica HOM05D002829 ORTHO05D003124 1.3e-13 80.9 182 31.9
Nn3g16206 Nelumbo nucifera HOM05D002829 ORTHO05D003124 1.3e-13 80.9 57 66.7
HPP92_006724 Vanilla planifolia HOM05D002829 ORTHO05D003124 1.7e-13 80.5 163 37.4
MBI13_g46995_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 6.6e-13 78.6 150 36.0
Nn7g36102 Nelumbo nucifera HOM05D002829 ORTHO05D003124 6.6e-13 78.6 79 53.2
CANSAT54G2047 Cannabis sativa HOM05D002829 ORTHO05D003124 8.6e-13 78.2 191 31.9
CiPaw.13G151500 Carya illinoinensis HOM05D002829 ORTHO05D003124 1.1e-12 77.8 173 34.1
Rhsim13G0210900 Rhododendron simsii HOM05D002829 ORTHO05D003124 1.1e-12 77.8 151 37.1
Ciclev10017998m.g Citrus clementina HOM05D002829 ORTHO05D003124 3.3e-12 76.3 191 32.5
Lj6g0027879 Lotus japonicus HOM05D002829 ORTHO05D003124 1.2e-11 74.3 180 35.6
Sc09g0000990 Simmondsia chinensis HOM05D002829 ORTHO05D003124 2.8e-11 73.2 158 33.5
Eucgr.J00699 Eucalyptus grandis HOM05D002829 ORTHO05D003124 3.6e-11 72.8 185 31.4
PSO384G3239 Papaver somniferum HOM05D002829 ORTHO05D003124 4.7e-11 72.4 177 29.9
CDE08G1493 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 1.0e-10 71.2 144 35.4
Nn5g30140 Nelumbo nucifera HOM05D002829 ORTHO05D003124 3.0e-10 69.7 74 50.0
HPP92_025013 Vanilla planifolia HOM05D002829 ORTHO05D003124 3.0e-10 69.7 173 34.1
Zm00001eb140690 Zea mays HOM05D002829 ORTHO05D003124 3.0e-10 69.7 204 30.9
Os05g0385400 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 8.9e-10 68.2 171 32.7
Zm00001eb394490 Zea mays HOM05D002829 ORTHO05D003124 1.2e-09 67.8 163 33.1
Zm00001eb110740 Zea mays HOM05D002829 ORTHO05D003124 2.6e-09 66.6 193 29.0
Zm00001eb286970 Zea mays HOM05D002829 ORTHO05D003124 7.5e-09 65.1 187 29.4
CDE09G1183 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 1.7e-08 63.9 159 31.4
A01p30880 Brassica napus HOM05D002829 ORTHO05D003124 2.9e-08 63.2 94 42.6
Os07g0659300 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 2.9e-08 63.2 161 32.9
Os03g0356526 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 3.7e-08 62.8 210 28.6
GSVIVG01008464001 Vitis vinifera HOM05D007478 ORTHO05D001700 4.9e-08 62.4 73 39.7
Dinv08199 Davidia involucrata HOM05D007478 ORTHO05D001700 6.4e-08 62.0 160 30.6
EL10As7g23792 Beta vulgaris HOM05D007478 ORTHO05D001700 8.3e-08 61.6 155 29.0
Nn6g35490 Nelumbo nucifera HOM05D002829 ORTHO05D003124 8.3e-08 61.6 74 45.9
Sc15g0005840 Simmondsia chinensis HOM05D007478 ORTHO05D001700 1.1e-07 61.2 162 29.0
Aqoxy5G00397 Aquilegia oxysepala HOM05D007478 ORTHO05D001700 3.2e-07 59.7 74 37.8
Gohir.D09G182900 Gossypium hirsutum HOM05D002255 ORTHO05D002288 7.0e-07 58.5 71 40.8
Gorai.006G205200 Gossypium raimondii HOM05D002255 ORTHO05D002288 7.0e-07 58.5 71 40.8
MSTRG.9308 Avicennia marina HOM05D007478 ORTHO05D001700 9.2e-07 58.2 168 29.8
ECA232G3803 Erigeron canadensis HOM05D002829 ORTHO05D003124 9.2e-07 58.2 189 27.5
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 9.2e-07 58.2 158 29.7
FvH4_5g17470 Fragaria vesca HOM05D007478 ORTHO05D001700 1.2e-06 57.8 160 27.5
Phvul.002G330900 Phaseolus vulgaris HOM05D007478 ORTHO05D001700 1.2e-06 57.8 158 30.4
ATR0326G068 Amborella trichopoda HOM05D001935 ORTHO05D001700 1.6e-06 57.4 106 29.2
GSVIVG01019671001 Vitis vinifera HOM05D002255 ORTHO05D002288 2.0e-06 57.0 68 41.2
FAN18G0488 Fragaria x ananassa HOM05D007478 ORTHO05D001700 2.7e-06 56.6 160 26.9
Gohir.A09G188100 Gossypium hirsutum HOM05D002255 ORTHO05D002288 2.7e-06 56.6 71 40.8
Cc04_g06130 Coffea canephora HOM05D007478 ORTHO05D001700 3.5e-06 56.2 158 27.2
Pp3c2_3800 Physcomitrium patens HOM05D023407 ORTHO05D025815 4.6e-06 55.8 168 27.4
QL04p087054 Quercus lobata HOM05D001935 ORTHO05D001700 5.9e-06 55.5 67 37.3
CSS0038502 Camellia sinensis var. sinensis HOM05D001022 ORTHO05D000825 7.8e-06 55.1 92 29.3
Hma1.2p1_0584F.1_g183420 Hydrangea macrophylla HOM05D001022 ORTHO05D000825 7.8e-06 55.1 76 35.5
Oeu046159.1 Olea europaea HOM05D007478 ORTHO05D001700 7.8e-06 55.1 158 27.2
RcHm_v2.0_Chr7g0178221 Rosa chinensis HOM05D007478 ORTHO05D001700 7.8e-06 55.1 160 28.1
SEGI_20159 Sequoiadendron giganteum HOM05D001022 ORTHO05D000825 7.8e-06 55.1 72 41.7


User provided reference genes

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