Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 3.0e-131 471.9 237 100.0
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 4.1e-96 355.1 242 74.4
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 1.7e-94 349.7 242 74.0
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 2.9e-94 349.0 237 74.3
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 5.0e-94 348.2 241 74.3
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 8.5e-94 347.4 242 73.1
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.5e-93 345.9 242 74.0
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 3.2e-93 345.5 242 72.3
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.2e-93 345.5 242 72.3
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 1.2e-92 343.6 246 74.0
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.2e-92 343.6 242 73.6
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.6e-92 343.2 242 71.1
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.1e-92 342.8 237 72.2
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 6.1e-92 341.3 242 73.1
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 6.1e-92 341.3 242 72.3
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 7.9e-92 340.9 242 71.9
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 2.3e-91 339.3 242 73.1
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 6.7e-91 337.8 244 72.1
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 8.8e-91 337.4 242 72.7
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.0e-90 336.3 244 71.3
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 5.7e-90 334.7 242 73.6
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 5.7e-90 334.7 242 70.2
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 9.7e-90 334.0 242 74.8
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.3e-89 333.6 250 68.8
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.7e-89 333.2 227 72.2
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 2.2e-89 332.8 244 70.9
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.8e-89 332.4 240 71.2
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.7e-89 332.0 219 74.0
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 4.8e-89 331.6 231 73.6
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 4.8e-89 331.6 247 71.3
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 6.3e-89 331.3 247 69.6
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 8.2e-89 330.9 241 70.5
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 8.2e-89 330.9 243 71.2
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 1.1e-88 330.5 243 71.6
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 3.1e-88 328.9 241 71.0
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 4.1e-88 328.6 242 71.5
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 4.1e-88 328.6 245 71.4
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 5.3e-88 328.2 249 70.7
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 6.9e-88 327.8 243 71.2
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 6.9e-88 327.8 243 71.2
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 6.9e-88 327.8 243 71.2
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 6.9e-88 327.8 241 70.5
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 1.2e-87 327.0 244 71.7
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.2e-87 327.0 241 70.5
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.2e-87 327.0 215 75.8
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.5e-87 326.6 246 69.5
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.0e-87 326.2 189 85.7
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.6e-87 325.9 243 70.4
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 4.5e-87 325.1 239 72.8
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 4.5e-87 325.1 247 69.2
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 7.7e-87 324.3 231 71.4
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 7.7e-87 324.3 230 71.3
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.3e-86 323.6 241 70.5
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 1.7e-86 323.2 240 70.4
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.0e-86 321.6 219 73.1
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 5.0e-86 321.6 243 68.7
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.1e-85 320.5 243 70.4
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 1.4e-85 320.1 243 69.1
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 2.5e-85 319.3 252 66.7
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 1.2e-84 317.0 198 78.3
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 3.6e-84 315.5 239 72.8
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 2.3e-83 312.8 242 69.0
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.1e-82 310.5 235 68.9
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.1e-82 310.5 198 78.8
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 2.6e-82 309.3 196 78.6
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.6e-82 309.3 255 64.7
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 5.7e-82 308.1 239 69.0
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 5.7e-82 308.1 243 65.8
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 9.7e-82 307.4 242 66.9
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.3e-81 307.0 242 67.4
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 4.8e-81 305.1 247 66.4
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 8.2e-81 304.3 218 70.2
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 8.2e-81 304.3 219 68.9
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 1.1e-80 303.9 241 67.6
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 1.8e-80 303.1 246 65.9
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 3.1e-80 302.4 242 65.3
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.2e-79 300.4 206 72.8
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.5e-79 300.1 244 65.2
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 1.5e-79 300.1 246 64.2
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 2.0e-79 299.7 228 68.9
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 2.0e-79 299.7 230 67.0
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.2e-78 296.2 243 64.2
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.2e-78 296.2 221 69.7
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.9e-78 295.8 243 64.2
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 1.1e-77 293.9 245 66.9
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.9e-77 293.1 192 77.6
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 2.5e-77 292.7 189 76.7
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 3.2e-77 292.4 193 74.6
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 4.2e-77 292.0 245 66.1
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 1.2e-76 290.4 220 70.0
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 2.1e-76 289.7 243 62.6
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 3.6e-76 288.9 198 72.7
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 4.7e-76 288.5 182 78.0
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 8.0e-76 287.7 246 61.0
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.0e-75 287.3 251 62.2
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.8e-75 286.6 243 61.7
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 2.3e-75 286.2 247 62.3
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 3.0e-75 285.8 247 61.9
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 5.2e-75 285.0 252 61.1
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 1.5e-74 283.5 202 70.8
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.0e-74 283.1 231 61.9
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 4.4e-74 282.0 250 62.0
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 7.4e-74 281.2 250 62.0
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.3e-73 280.4 246 60.6
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 1.7e-73 280.0 251 61.8
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.4e-72 276.9 246 61.8
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.4e-72 276.9 246 61.8
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 4.1e-72 275.4 249 60.6
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 1.0e-70 270.8 252 59.1
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.3e-70 270.4 168 79.2
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.7e-70 270.0 214 66.8
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 2.2e-70 269.6 161 82.0
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 2.1e-68 263.1 185 73.0
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 8.3e-65 251.1 175 68.6
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 2.2e-62 243.0 203 66.5
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.1e-56 224.2 121 86.8
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 4.1e-56 222.2 120 87.5
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.9e-55 218.4 189 63.5
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 3.6e-52 209.1 121 81.8
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.6e-50 203.0 185 58.9
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 2.6e-50 203.0 165 64.2
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 3.7e-49 199.1 111 81.1
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 3.3e-45 186.0 178 52.2
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 9.8e-42 174.5 181 45.3
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 2.9e-41 172.9 154 51.9
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 7.8e-39 164.9 173 49.1
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 6.2e-36 155.2 190 41.6
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 4.3e-29 132.5 68 86.8
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 3.6e-28 129.4 143 39.2
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 4.2e-16 89.4 158 29.1
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 7.8e-15 85.1 123 43.9
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.0e-14 84.7 111 48.6
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 4.0e-11 72.8 185 30.3
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.2e-10 71.2 102 49.0
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 3.0e-06 56.6 67 50.7


User provided reference genes

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