Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3563 Avicennia marina HOM05D004610 ORTHO05D001148 5.7e-92 340.9 172 100.0
MSTRG.15301 Avicennia marina HOM05D004610 ORTHO05D001148 1.1e-55 220.3 172 69.2
SalBow5G2901 Salvia bowleyana HOM05D004610 ORTHO05D001148 7.1e-50 201.1 164 69.5
Dinv33954 Davidia involucrata HOM05D004610 ORTHO05D001148 1.2e-41 173.7 164 55.5
Oeu050377.1 Olea europaea HOM05D004610 ORTHO05D001148 1.6e-41 173.3 167 57.5
Dinv34812 Davidia involucrata HOM05D004610 ORTHO05D001133 2.7e-41 172.6 164 56.1
Migut.L00329 Erythranthe guttata HOM05D004610 ORTHO05D001148 6.0e-41 171.4 179 60.3
Oeu016626.1 Olea europaea HOM05D004610 ORTHO05D001148 1.3e-40 170.2 167 54.5
Cc07_g08740 Coffea canephora HOM05D004610 ORTHO05D001148 1.9e-39 166.4 167 53.9
Hma1.2p1_1109F.1_g258110 Hydrangea macrophylla HOM05D004610 ORTHO05D001148 7.6e-36 154.5 165 52.7
PGSC0003DMG400026403 Solanum tuberosum HOM05D004610 ORTHO05D001148 6.5e-35 151.4 157 53.5
Lj4C191T3 Lonicera japonica HOM05D004610 ORTHO05D001148 1.9e-34 149.8 165 51.5
Solyc02g086130.4 Solanum lycopersicum HOM05D004610 ORTHO05D001148 4.2e-34 148.7 157 52.2
Sopen02g030820 Solanum pennellii HOM05D004610 ORTHO05D001148 4.2e-34 148.7 157 52.2
Haze_14166 Corylus avellana HOM05D004610 ORTHO05D001148 7.1e-34 147.9 170 54.1
Manes.01G111200 Manihot esculenta HOM05D004610 ORTHO05D001148 9.3e-34 147.5 172 52.3
Nitab4.5_0000912g0100 Nicotiana tabacum HOM05D004610 ORTHO05D001148 1.6e-33 146.7 157 52.2
Nitab4.5_0004416g0030 Nicotiana tabacum HOM05D004610 ORTHO05D001148 2.1e-33 146.4 158 52.5
GSVIVG01031010001 Vitis vinifera HOM05D004610 ORTHO05D001148 4.6e-33 145.2 172 48.3
CiPaw.03G062700 Carya illinoinensis HOM05D004610 ORTHO05D001148 1.3e-32 143.7 171 51.5
DCAR_021448 Daucus carota HOM05D004610 ORTHO05D001148 3.0e-32 142.5 165 50.9
Nn4g23904 Nelumbo nucifera HOM05D004610 ORTHO05D001148 6.7e-32 141.4 167 49.1
QL02p051038 Quercus lobata HOM05D004610 ORTHO05D001148 1.9e-31 139.8 171 50.9
QL12p016556 Quercus lobata HOM05D004610 ORTHO05D001148 1.9e-31 139.8 171 50.9
CiPaw.04G042900 Carya illinoinensis HOM05D004610 ORTHO05D001148 5.7e-31 138.3 159 54.1
Peaxi162Scf00394g00714 Petunia axillaris HOM05D004610 ORTHO05D001148 7.4e-31 137.9 160 49.4
Aqoxy3G00248 Aquilegia oxysepala HOM05D004610 ORTHO05D001148 3.7e-30 135.6 164 50.0
Lj2A441T53 Lonicera japonica HOM05D004610 ORTHO05D001148 4.8e-30 135.2 162 46.3
TAR629G1786 Trochodendron aralioides HOM05D004610 ORTHO05D001148 4.8e-30 135.2 176 44.3
TWI77G0057 Tripterygium wilfordii HOM05D004610 ORTHO05D001148 6.3e-30 134.8 165 51.5
Rhsim10G0068500 Rhododendron simsii HOM05D004610 ORTHO05D001148 8.2e-30 134.4 165 47.9
Actinidia36329 Actinidia chinensis HOM05D004610 ORTHO05D001148 4.1e-29 132.1 164 48.8
Potri.017G116000 Populus trichocarpa HOM05D004610 ORTHO05D001148 9.0e-29 131.0 176 50.6
Lalb_Chr04g0257511 Lupinus albus HOM05D004610 ORTHO05D001148 1.2e-28 130.6 177 48.0
MD09G1253500 Malus domestica HOM05D004610 ORTHO05D001148 1.5e-28 130.2 169 50.3
Sc11g0008360 Simmondsia chinensis HOM05D004610 ORTHO05D001148 2.0e-28 129.8 164 45.7
Prupe.3G143500 Prunus persica HOM05D004610 ORTHO05D001148 7.6e-28 127.9 164 47.6
MD17G1245400 Malus domestica HOM05D004610 ORTHO05D001148 1.0e-27 127.5 165 50.3
Atru.chr1.1663 Acer truncatum HOM05D004610 ORTHO05D001148 1.3e-27 127.1 169 48.5
TWI74G1419 Tripterygium wilfordii HOM05D004610 ORTHO05D001148 1.7e-27 126.7 171 47.4
COL.COLO4_09347 Corchorus olitorius HOM05D004610 ORTHO05D001148 2.9e-27 125.9 179 45.3
Sabra17G0096000 Salix brachista HOM05D004610 ORTHO05D001148 2.9e-27 125.9 170 49.4
Thecc.04G132400 Theobroma cacao HOM05D004610 ORTHO05D001148 5.0e-27 125.2 178 47.2
Lalb_Chr17g0335941 Lupinus albus HOM05D004610 ORTHO05D001148 8.5e-27 124.4 178 43.8
Psat3g098280 Pisum sativum HOM05D004610 ORTHO05D001148 4.2e-26 122.1 172 44.2
vmacro05540 Vaccinium macrocarpon HOM05D004610 ORTHO05D001148 4.2e-26 122.1 169 46.7
Gohir.D11G170100 Gossypium hirsutum HOM05D004610 ORTHO05D001148 9.3e-26 120.9 164 49.4
TPR.G31531 Trifolium pratense HOM05D004610 ORTHO05D001148 9.3e-26 120.9 164 46.3
Eucgr.J01505 Eucalyptus grandis HOM05D004610 ORTHO05D001148 1.2e-25 120.6 163 49.7
Potri.004G098300 Populus trichocarpa HOM05D004610 ORTHO05D001148 1.2e-25 120.6 165 50.9
Duzib133G1423 Durio zibethinus HOM05D004610 ORTHO05D001148 2.7e-25 119.4 177 47.5
Duzib138G0683 Durio zibethinus HOM05D004610 ORTHO05D001148 2.7e-25 119.4 179 46.9
PGR042G0456 Punica granatum HOM05D004610 ORTHO05D001148 2.7e-25 119.4 161 46.6
DCAR_017186 Daucus carota HOM05D004610 ORTHO05D001148 3.6e-25 119.0 168 44.6
Lj2g0017794 Lotus japonicus HOM05D004610 ORTHO05D001148 3.6e-25 119.0 183 43.7
Medtr7g082220 Medicago truncatula HOM05D004610 ORTHO05D001148 3.6e-25 119.0 163 46.6
Cpa.g.sc170.58 Carica papaya HOM05D004610 ORTHO05D001148 6.1e-25 118.2 165 47.3
AUR62009008 Chenopodium quinoa HOM05D004610 ORTHO05D001148 6.1e-25 118.2 168 46.4
Gorai.007G181900 Gossypium raimondii HOM05D004610 ORTHO05D001148 6.1e-25 118.2 168 48.2
Ah.16g101700 Amaranthus hybridus HOM05D004610 ORTHO05D001148 1.0e-24 117.5 175 45.1
Glyma.08G366600 Glycine max HOM05D004610 ORTHO05D001148 1.3e-24 117.1 157 47.1
AUR62023294 Chenopodium quinoa HOM05D004610 ORTHO05D001148 1.8e-24 116.7 169 48.5
Phvul.008G007100 Phaseolus vulgaris HOM05D004610 ORTHO05D001148 3.9e-24 115.5 168 47.0
VMungo1383G3338 Vigna mungo HOM05D004610 ORTHO05D001148 6.7e-24 114.8 179 44.7
Lalb_Chr21g0317781 Lupinus albus HOM05D004610 ORTHO05D001148 8.7e-24 114.4 198 41.9
TWI53G0037 Tripterygium wilfordii HOM05D004610 ORTHO05D001148 8.7e-24 114.4 172 46.5
ECA246G0476 Erigeron canadensis HOM05D004610 ORTHO05D001148 1.1e-23 114.0 166 43.4
PGR004G0387 Punica granatum HOM05D004610 ORTHO05D001148 1.9e-23 113.2 150 49.3
SGA_v2.0_scaffold115G32105 Striga asiatica HOM05D004610 ORTHO05D001148 1.9e-23 113.2 136 52.2
Gohir.A11G163800 Gossypium hirsutum HOM05D004610 ORTHO05D001148 2.5e-23 112.8 167 46.7
CANSAT78G0943 Cannabis sativa HOM05D004610 ORTHO05D001148 4.3e-23 112.1 171 42.7
Lj1g0023090 Lotus japonicus HOM05D004610 ORTHO05D001148 5.7e-23 111.7 159 45.3
Ca_08077_v3 Cicer arietinum L. HOM05D004610 ORTHO05D001148 9.7e-23 110.9 158 45.6
Ciclev10010987m.g Citrus clementina HOM05D004610 ORTHO05D001148 9.7e-23 110.9 167 43.1
Sabra04G0081200 Salix brachista HOM05D004610 ORTHO05D001148 9.7e-23 110.9 155 49.0
Medtr6g018770 Medicago truncatula HOM05D004610 ORTHO05D001148 1.3e-22 110.5 165 43.0
Glyma.18G295800 Glycine max HOM05D004610 ORTHO05D001148 2.2e-22 109.8 166 46.4
ClCG05G012340 Citrullus lanatus HOM05D004610 ORTHO05D001148 2.8e-22 109.4 169 42.6
MELO3C023734.2 Cucumis melo HOM05D004610 ORTHO05D001148 3.7e-22 109.0 163 46.6
EL10Ac2g04555 Beta vulgaris HOM05D004610 ORTHO05D001148 4.8e-22 108.6 177 41.8
CsaV3_3G020250 Cucumis sativus L. HOM05D004610 ORTHO05D001148 8.2e-22 107.8 163 46.0
Sed0002424 Sechium edule HOM05D004610 ORTHO05D001148 8.2e-22 107.8 156 44.9
arahy.Tifrunner.gnm1.ann1.165KFU Arachis hypogaea HOM05D004610 ORTHO05D001148 1.8e-21 106.7 171 46.2
arahy.Tifrunner.gnm1.ann1.EX8XGT Arachis hypogaea HOM05D004610 ORTHO05D001148 1.8e-21 106.7 171 46.2
Psat1g081040 Pisum sativum HOM05D004610 ORTHO05D001148 3.1e-21 105.9 180 41.1
RcHm_v2.0_Chr2g0126071 Rosa chinensis HOM05D004610 ORTHO05D001148 4.1e-21 105.5 171 42.1
Ca_04369_v3 Cicer arietinum L. HOM05D004610 ORTHO05D001148 1.2e-20 104.0 185 42.7
DCAR_025910 Daucus carota HOM05D004610 ORTHO05D001148 1.0e-19 100.9 165 42.4
Hund13710 Selenicereus undatus HOM05D004610 ORTHO05D001148 8.5e-19 97.8 192 36.5
THA.LOC104805573 Tarenaya hassleriana HOM05D004610 ORTHO05D001148 7.2e-18 94.7 157 43.9
MBI09_g36995_MAGBIO Magnolia biondii HOM05D004610 ORTHO05D001148 1.2e-17 94.0 118 44.9
Thhalv10018132m.g Eutrema salsugineum HOM05D004610 ORTHO05D001148 6.1e-17 91.7 158 44.3
Aa31LG2G3440 Aethionema arabicum HOM05D004610 ORTHO05D001148 3.9e-16 89.0 156 41.7
AT1G67040 Arabidopsis thaliana HOM05D004610 ORTHO05D001148 3.9e-16 89.0 157 41.4
CARHR059440 Cardamine hirsuta HOM05D004610 ORTHO05D001148 5.1e-16 88.6 165 42.4
ATR1125G050 Amborella trichopoda HOM05D004610 ORTHO05D001148 6.7e-16 88.2 161 39.1
HanXRQChr12g0375771 Helianthus annuus HOM05D004610 ORTHO05D001148 1.1e-15 87.4 144 41.0
AL2G25380 Arabidopsis lyrata HOM05D004610 ORTHO05D001148 1.5e-15 87.0 160 40.6
Atru.chr7.2579 Acer truncatum HOM05D004610 ORTHO05D001148 3.3e-15 85.9 110 46.4
CDE06G1633 Ceratophyllum demersum HOM05D004610 ORTHO05D001148 3.3e-15 85.9 167 36.5
CDE12G0399 Ceratophyllum demersum HOM05D004610 ORTHO05D001148 9.7e-15 84.3 166 36.1
Carub.0002s1333 Capsella rubella HOM05D004610 ORTHO05D001148 2.2e-14 83.2 161 39.8
BcaNung06249 Brassica carinata HOM05D004610 ORTHO05D001148 3.7e-14 82.4 163 39.3
Sp5g21980 Schrenkiella parvula HOM05D004610 ORTHO05D001148 3.7e-14 82.4 165 37.6
BolC6t39124H Brassica oleracea HOM05D004610 ORTHO05D001148 8.2e-14 81.3 165 40.0
HanXRQChr15g0470371 Helianthus annuus HOM05D004610 ORTHO05D001148 8.2e-14 81.3 172 34.3
SEGI_10040 Sequoiadendron giganteum HOM05D002110 ORTHO05D001148 3.1e-13 79.3 175 33.1
TAR622G0956 Trochodendron aralioides HOM05D004610 ORTHO05D001148 3.1e-13 79.3 91 49.5
BcaB05g24227 Brassica carinata HOM05D004610 ORTHO05D001148 4.1e-13 79.0 149 39.6
A07p33780 Brassica napus HOM05D004610 ORTHO05D001148 4.1e-13 79.0 163 38.7
C06p43150 Brassica napus HOM05D004610 ORTHO05D001148 9.1e-13 77.8 166 36.7
Medtr4g008820 Medicago truncatula HOM05D004610 ORTHO05D001148 2.0e-12 76.6 163 38.0
BraA07t31004Z Brassica rapa HOM05D004610 ORTHO05D001148 2.6e-12 76.3 160 38.1
A02p13870 Brassica napus HOM05D004610 ORTHO05D001148 7.7e-12 74.7 142 40.1
THA.LOC104822621 Tarenaya hassleriana HOM05D004610 ORTHO05D001148 5.0e-11 72.0 162 41.4
HPP92_021870 Vanilla planifolia HOM05D004610 ORTHO05D001148 6.5e-11 71.6 162 34.0
MSTRG.3564 Avicennia marina HOM05D004610 ORTHO05D001148 4.2e-10 68.9 33 100.0
BraA02t06448Z Brassica rapa HOM05D004610 ORTHO05D001148 5.5e-10 68.6 139 39.6
Lsat_1_v5_gn_3_80440 Lactuca sativa HOM05D004610 ORTHO05D001148 7.2e-10 68.2 147 38.8
BcaC03g14786 Brassica carinata HOM05D004610 ORTHO05D001148 1.2e-09 67.4 147 36.1
CAN.G625.29 Capsicum annuum HOM05D004610 ORTHO05D001148 3.6e-09 65.9 157 33.1
C02p22340 Brassica napus HOM05D004610 ORTHO05D001148 6.1e-09 65.1 147 36.7
BolC2t08387H Brassica oleracea HOM05D004610 ORTHO05D001148 6.1e-09 65.1 147 36.7
unitig_0.g840 Utricularia gibba HOM05D004610 ORTHO05D001148 3.0e-08 62.8 122 34.4
THA.LOC104820943 Tarenaya hassleriana HOM05D004610 ORTHO05D001148 1.1e-07 60.8 173 35.3
Aqoxy2G02804 Aquilegia oxysepala HOM05D002110 ORTHO05D001148 1.5e-07 60.5 157 33.8
Hund21745 Selenicereus undatus HOM05D002110 ORTHO05D001148 1.5e-07 60.5 157 35.0
GSVIVG01031214001 Vitis vinifera HOM05D002110 ORTHO05D001148 1.5e-07 60.5 153 32.0
CSS0050364 Camellia sinensis var. sinensis HOM05D002110 ORTHO05D001148 5.7e-07 58.5 169 33.1
ClCG06G004760 Citrullus lanatus HOM05D002110 ORTHO05D001148 9.7e-07 57.8 163 30.7
MBI18_g09596_MAGBIO Magnolia biondii HOM05D002110 ORTHO05D001148 9.7e-07 57.8 156 34.0
GSVIVG01035042001 Vitis vinifera HOM05D002110 ORTHO05D001148 1.3e-06 57.4 172 31.4
Duzib177G1097 Durio zibethinus HOM05D002110 ORTHO05D001148 2.8e-06 56.2 155 29.7
Gohir.D11G282500 Gossypium hirsutum HOM05D002110 ORTHO05D001148 2.8e-06 56.2 148 31.8
Psat1g159720 Pisum sativum HOM05D002110 ORTHO05D001148 2.8e-06 56.2 158 31.0
Potri.008G108600 Populus trichocarpa HOM05D002110 ORTHO05D001148 2.8e-06 56.2 141 31.9
Potri.T171201 Populus trichocarpa HOM05D002110 ORTHO05D001148 2.8e-06 56.2 141 31.9
CsaV3_6G022550 Cucumis sativus L. HOM05D002110 ORTHO05D001148 3.7e-06 55.8 165 30.9
Nitab4.5_0000169g0020 Nicotiana tabacum HOM05D002110 ORTHO05D001148 3.7e-06 55.8 167 29.9
Zm00001eb342900 Zea mays HOM05D046342 ORTHO05D001148 4.8e-06 55.5 164 33.5
Peaxi162Scf00673g00028 Petunia axillaris HOM05D002110 ORTHO05D001148 6.3e-06 55.1 152 30.9
Actinidia16848 Actinidia chinensis HOM05D002110 ORTHO05D001148 8.2e-06 54.7 151 30.5
Migut.B00995 Erythranthe guttata HOM05D002110 ORTHO05D001148 8.2e-06 54.7 154 31.8
Sc19g0003440 Simmondsia chinensis HOM05D002110 ORTHO05D001148 8.2e-06 54.7 160 31.9
THA.LOC104803105 Tarenaya hassleriana HOM05D002110 ORTHO05D001148 8.2e-06 54.7 152 30.3
TWI53G1428 Tripterygium wilfordii HOM05D002110 ORTHO05D001148 8.2e-06 54.7 157 29.9


User provided reference genes

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