Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.7e-224 782.3 395 100.0
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 3.6e-182 641.7 398 82.7
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 2.3e-176 622.5 401 79.1
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 9.0e-157 557.4 405 72.1
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 2.9e-155 552.4 398 70.1
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 6.4e-155 551.2 395 71.6
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 7.1e-154 547.7 398 71.1
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 1.8e-152 543.1 394 69.8
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 1.1e-151 540.4 398 70.4
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 1.5e-151 540.0 398 68.3
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 1.1e-149 533.9 413 69.0
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 6.9e-149 531.2 397 70.3
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 1.5e-148 530.0 397 70.0
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 4.5e-148 528.5 398 68.6
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 5.8e-148 528.1 398 68.8
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.9e-148 527.3 390 69.2
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 1.3e-147 526.9 398 67.6
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.3e-147 526.9 390 69.2
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.3e-147 526.9 390 69.2
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 2.2e-147 526.2 399 67.7
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 3.8e-147 525.4 390 69.5
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 4.9e-147 525.0 399 68.7
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 6.4e-147 524.6 390 69.7
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 8.4e-147 524.2 399 68.9
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 2.4e-146 522.7 388 68.6
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 2.4e-146 522.7 397 69.3
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 5.5e-146 521.5 398 67.8
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 9.3e-146 520.8 399 66.9
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 2.7e-145 519.2 398 66.8
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 6.0e-145 518.1 399 67.2
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 1.0e-144 517.3 388 68.6
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 1.8e-144 516.5 397 67.0
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.8e-144 516.5 400 67.8
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 3.0e-144 515.8 398 67.6
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 3.9e-144 515.4 412 66.3
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 3.9e-144 515.4 392 68.6
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 3.9e-144 515.4 398 69.1
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 1.5e-143 513.5 397 66.5
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 2.5e-143 512.7 398 66.8
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 3.3e-143 512.3 396 66.4
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 5.6e-143 511.5 398 66.6
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 5.6e-143 511.5 400 67.0
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 7.4e-143 511.1 393 67.4
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 9.6e-143 510.8 396 66.2
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.6e-142 510.0 399 66.2
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.7e-142 508.8 399 66.2
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 2.4e-141 506.1 395 67.1
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 6.9e-141 504.6 394 65.5
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 6.9e-141 504.6 400 66.0
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.0e-140 503.1 398 67.1
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 5.8e-140 501.5 396 64.9
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 7.6e-140 501.1 427 63.2
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 1.7e-139 500.0 393 65.4
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 2.2e-139 499.6 395 65.1
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 4.9e-139 498.4 444 61.3
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 6.5e-139 498.0 397 65.0
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.5e-139 498.0 391 66.0
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.5e-139 498.0 413 63.7
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 1.1e-138 497.3 389 65.6
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 1.1e-138 497.3 425 63.3
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.1e-138 497.3 399 63.7
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 4.2e-138 495.4 400 64.2
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 7.1e-138 494.6 396 65.4
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 7.1e-138 494.6 398 64.6
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 9.3e-138 494.2 394 64.2
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 9.3e-138 494.2 396 65.4
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 2.1e-137 493.0 400 64.2
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 3.5e-137 492.3 390 66.9
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 4.6e-137 491.9 396 64.1
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 2.3e-136 489.6 394 64.0
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 3.0e-136 489.2 394 63.7
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 3.9e-136 488.8 409 63.8
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 5.7e-135 485.0 400 63.5
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 8.2e-134 481.1 407 62.9
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 5.3e-133 478.4 425 60.5
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 6.9e-133 478.0 395 63.5
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.9e-132 474.9 355 69.6
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 1.1e-130 470.7 397 62.0
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 1.4e-130 470.3 392 63.3
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 4.2e-130 468.8 406 63.1
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 7.2e-130 468.0 392 64.0
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.6e-129 466.8 392 64.3
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.7e-129 466.1 405 62.5
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.5e-127 460.3 430 59.1
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 1.9e-127 459.9 383 62.7
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 3.3e-127 459.1 389 61.7
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 4.8e-126 455.3 397 62.0
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.1e-125 454.1 394 59.4
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 3.4e-124 449.1 400 60.8
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-122 443.7 396 59.6
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 2.7e-121 439.5 410 56.1
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 1.4e-120 437.2 308 72.1
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.8e-120 436.8 416 59.6
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 1.1e-119 434.1 395 58.7
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.0e-119 433.3 391 59.1
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 6.3e-118 428.3 394 58.6
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 6.3e-118 428.3 394 58.9
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 2.4e-117 426.4 398 58.0
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 2.6e-116 422.9 396 56.8
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 1.3e-115 420.6 387 59.7
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 3.3e-111 406.0 438 54.1
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.7e-110 403.7 374 59.6
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 2.8e-110 402.9 396 55.8
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 1.6e-108 397.1 394 55.3
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.7e-107 393.7 402 55.7
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 3.8e-107 392.5 401 55.9
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.5e-98 364.0 270 68.1
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 3.1e-93 346.3 427 48.2
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 7.2e-90 335.1 406 48.8
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 6.8e-88 328.6 390 47.9
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 1.5e-87 327.4 306 57.2
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 1.0e-83 314.7 395 46.8
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 8.6e-83 311.6 307 55.4
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 5.8e-79 298.9 382 44.5
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 1.7e-75 287.3 426 40.6
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.7e-70 270.8 278 54.7
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 7.8e-68 261.9 237 58.6
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 3.6e-57 226.5 338 45.0
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 1.3e-54 218.0 352 43.5
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 2.2e-54 217.2 146 77.4
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 4.9e-54 216.1 248 48.0
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 1.3e-43 181.4 154 57.8
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.9e-35 153.3 110 69.1
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.1e-34 151.8 110 68.2
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.9e-34 151.0 110 69.1
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.4e-32 144.8 110 66.4
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 1.8e-27 127.9 108 64.8
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 3.9e-27 126.7 97 68.0
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 2.5e-26 124.0 118 60.2
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 2.9e-22 110.5 89 66.3
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 3.8e-22 110.2 98 54.1
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 4.9e-22 109.8 125 50.4
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.3e-18 97.1 66 74.2
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 5.9e-15 86.3 82 57.3
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 2.5e-13 80.9 80 52.5
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 3.6e-12 77.0 95 46.3
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.1e-10 72.0 61 59.0
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.1e-10 72.0 50 70.0
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 2.0e-10 71.2 267 26.6
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 3.1e-08 63.9 78 42.3


User provided reference genes

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