Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 2.2e-148 528.9 249 100.0
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 4.7e-119 431.4 250 78.0
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 1.8e-115 419.5 250 74.8
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.8e-115 419.5 251 76.1
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 3.1e-115 418.7 250 75.2
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 7.0e-115 417.5 250 76.0
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 7.0e-115 417.5 251 75.7
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 7.7e-114 414.1 250 75.6
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.9e-113 412.1 251 74.5
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 1.9e-112 409.5 250 74.8
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 1.9e-112 409.5 249 73.9
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 1.9e-112 409.5 251 73.7
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 5.5e-112 407.9 251 73.3
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 5.5e-112 407.9 250 72.4
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 7.2e-112 407.5 250 71.6
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 1.2e-111 406.8 251 73.3
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 3.6e-111 405.2 251 73.3
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.4e-110 403.3 250 73.2
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 1.4e-110 403.3 248 71.4
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 1.8e-110 402.9 248 70.2
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 1.8e-110 402.9 250 73.6
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 2.3e-110 402.5 250 74.0
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.2e-110 401.4 250 73.2
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 8.8e-110 400.6 250 71.2
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 8.8e-110 400.6 250 71.2
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 2.0e-109 399.4 251 73.3
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.0e-109 399.4 250 72.8
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 2.0e-109 399.4 250 72.8
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.4e-109 398.7 250 70.8
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 5.7e-109 397.9 250 70.4
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 7.5e-109 397.5 250 71.6
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.2e-108 396.0 250 70.4
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 4.9e-108 394.8 251 72.5
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 6.3e-108 394.4 250 70.4
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 6.3e-108 394.4 250 70.0
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 6.3e-108 394.4 249 69.5
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.1e-107 393.7 250 68.8
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 1.1e-107 393.7 250 71.6
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.8e-107 392.9 250 72.0
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 2.4e-107 392.5 250 71.2
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 7.0e-107 391.0 250 70.8
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 9.2e-107 390.6 250 70.4
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 3.5e-106 388.7 250 70.4
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 1.0e-105 387.1 250 68.4
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 1.0e-105 387.1 250 71.2
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 2.3e-105 386.0 250 70.0
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 2.3e-105 386.0 249 68.3
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 2.3e-105 386.0 250 71.6
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 2.3e-105 386.0 251 70.5
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.8e-105 385.2 250 69.6
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 6.6e-105 384.4 250 69.6
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.5e-104 382.5 250 69.6
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 5.6e-104 381.3 250 69.2
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 1.6e-103 379.8 249 65.9
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 2.8e-103 379.0 250 68.8
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 6.1e-103 377.9 252 68.7
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 1.8e-102 376.3 249 66.3
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 5.2e-102 374.8 252 69.0
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 5.2e-102 374.8 252 68.7
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 1.2e-101 373.6 250 67.6
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 1.5e-101 373.2 252 66.3
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 2.0e-101 372.9 252 66.7
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 3.4e-101 372.1 250 67.2
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 5.7e-101 371.3 252 67.9
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 2.2e-100 369.4 251 68.1
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 2.2e-100 369.4 250 69.2
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 6.4e-100 367.9 251 66.9
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 6.4e-100 367.9 252 66.7
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 1.4e-99 366.7 252 67.1
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 7.0e-99 364.4 252 65.9
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 1.6e-98 363.2 252 66.3
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 1.6e-98 363.2 247 67.2
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 3.5e-98 362.1 250 66.8
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 5.9e-98 361.3 247 66.4
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 1.0e-97 360.5 248 65.3
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 1.1e-96 357.1 252 64.7
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 1.6e-95 353.2 253 64.4
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.6e-95 353.2 250 64.8
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 2.8e-95 352.4 250 62.8
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 1.1e-94 350.5 252 64.7
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 1.1e-94 350.5 250 64.8
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 1.4e-94 350.1 252 62.3
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 1.4e-94 350.1 252 62.3
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 1.4e-94 350.1 252 62.3
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 1.4e-94 350.1 252 62.3
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.4e-94 350.1 250 65.6
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 1.4e-94 350.1 252 63.1
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 1.8e-94 349.7 252 62.3
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 6.8e-94 347.8 228 69.7
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 1.2e-93 347.1 252 63.9
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 3.4e-93 345.5 252 62.3
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 7.5e-93 344.4 252 62.7
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 2.2e-92 342.8 252 61.1
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 2.2e-92 342.8 238 65.5
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 2.2e-92 342.8 252 61.9
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 2.1e-87 326.2 262 59.5
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 4.4e-85 318.5 237 57.8
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 8.3e-84 314.3 203 69.0
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 3.5e-82 308.9 246 54.9
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 1.1e-80 303.9 246 55.3
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 3.3e-80 302.4 247 56.7
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 9.9e-77 290.8 246 54.1
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 1.7e-76 290.0 249 53.4
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 2.1e-74 283.1 245 54.3
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 3.9e-73 278.9 250 52.4
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 2.1e-66 256.5 249 48.2
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 1.6e-63 246.9 267 45.3
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.1e-59 234.2 154 66.9
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 6.0e-58 228.4 259 48.6
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 3.9e-57 225.7 282 47.5
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 3.3e-56 222.6 139 71.9
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 7.4e-48 194.9 112 77.7
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 2.1e-42 176.8 99 79.8
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 3.7e-31 139.4 95 64.2
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 7.9e-26 121.7 153 46.4
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 6.7e-25 118.6 100 61.0
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 2.6e-21 106.7 72 59.7
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 3.3e-16 89.7 54 70.4
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 1.3e-12 77.8 49 65.3
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 1.7e-12 77.4 45 73.3
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 2.1e-10 70.5 140 32.9
SMO340G0132 Selaginella moellendorffii HOM05D027965 ORTHO05D007451 2.8e-07 60.1 115 30.4
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 2.4e-06 57.0 111 30.6
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 4.1e-06 56.2 111 30.6


User provided reference genes

Program Settings