Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.5e-52 209.1 102 100.0
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.5e-42 176.0 103 83.5
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.2e-39 166.4 97 81.4
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.2e-39 166.4 97 81.4
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 2.0e-39 165.6 102 76.5
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 5.7e-39 164.1 102 77.5
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 4.8e-38 161.0 103 75.7
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.4e-37 159.5 103 78.6
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.4e-37 159.5 90 83.3
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 3.1e-37 158.3 102 74.5
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 4.1e-37 157.9 103 74.8
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.2e-36 156.4 102 74.5
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.6e-36 156.0 102 75.5
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 3.5e-36 154.8 102 74.5
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 3.5e-36 154.8 102 77.5
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 5.9e-36 154.1 102 73.5
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 7.7e-36 153.7 102 75.5
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.3e-35 152.9 102 74.5
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.7e-35 152.5 90 82.2
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.2e-35 152.1 100 72.0
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.2e-35 152.1 102 75.5
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 5.0e-35 151.0 105 71.4
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.5e-35 150.6 101 71.3
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.5e-35 150.6 101 71.3
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 6.5e-35 150.6 102 73.5
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.1e-34 149.8 101 70.3
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.5e-34 149.4 103 73.8
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.9e-34 149.1 101 72.3
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 2.5e-34 148.7 103 69.9
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 3.2e-34 148.3 106 72.6
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 4.2e-34 147.9 102 71.6
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 4.2e-34 147.9 103 72.8
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 5.5e-34 147.5 103 70.9
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 5.5e-34 147.5 100 71.0
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 7.2e-34 147.1 101 72.3
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.2e-33 146.4 103 74.8
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.2e-33 146.4 102 71.6
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.2e-33 146.4 98 70.4
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 2.1e-33 145.6 102 71.6
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 2.7e-33 145.2 103 70.9
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.7e-33 145.2 99 70.7
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.6e-33 144.8 103 70.9
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 3.6e-33 144.8 101 68.3
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 4.7e-33 144.4 102 71.6
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 4.7e-33 144.4 102 72.5
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 4.7e-33 144.4 104 70.2
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 6.1e-33 144.1 105 67.6
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.4e-32 142.9 101 68.3
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 1.8e-32 142.5 101 66.3
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.8e-32 142.5 103 71.8
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.8e-32 142.5 102 68.6
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.8e-32 142.5 102 67.6
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.3e-32 142.1 102 72.5
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.3e-32 142.1 105 69.5
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.0e-32 141.7 103 70.9
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.0e-32 141.7 102 65.7
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 3.0e-32 141.7 103 70.9
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 4.0e-32 141.4 102 71.6
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 5.2e-32 141.0 102 71.6
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 5.2e-32 141.0 97 68.0
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 5.2e-32 141.0 101 67.3
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 6.8e-32 140.6 100 71.0
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 6.8e-32 140.6 100 71.0
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.2e-31 139.8 104 68.3
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 1.5e-31 139.4 102 68.6
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.5e-31 139.4 105 70.5
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 2.0e-31 139.0 105 69.5
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.6e-31 138.7 90 74.4
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 3.4e-31 138.3 102 68.6
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 4.4e-31 137.9 101 67.3
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 4.4e-31 137.9 92 73.9
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.4e-31 137.9 103 66.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 5.7e-31 137.5 92 73.9
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 5.7e-31 137.5 103 69.9
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 5.7e-31 137.5 103 68.9
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 9.8e-31 136.7 91 73.6
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 9.8e-31 136.7 91 76.9
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 9.8e-31 136.7 102 67.6
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.3e-30 136.3 102 66.7
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.7e-30 136.0 102 67.6
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.2e-30 135.6 104 70.2
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 3.7e-30 134.8 101 66.3
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 4.8e-30 134.4 103 68.0
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 8.3e-30 133.7 104 68.3
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.1e-29 133.3 93 66.7
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.4e-29 132.9 101 66.3
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 1.4e-29 132.9 102 65.7
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.4e-29 132.9 105 64.8
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.8e-29 132.5 101 64.4
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 1.8e-29 132.5 103 68.0
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.8e-29 132.5 106 66.0
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.8e-29 132.5 106 66.0
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.4e-29 132.1 106 66.0
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.1e-29 131.7 106 66.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 3.1e-29 131.7 101 66.3
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 4.1e-29 131.3 102 66.7
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 5.4e-29 131.0 104 62.5
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.0e-29 130.6 106 65.1
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 7.0e-29 130.6 106 65.1
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 9.1e-29 130.2 101 64.4
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.2e-28 129.8 101 64.4
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.0e-28 129.0 73 74.0
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 3.5e-28 128.3 101 64.4
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 3.5e-28 128.3 101 64.4
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 7.7e-28 127.1 101 61.4
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.0e-27 126.7 106 64.2
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 1.0e-27 126.7 107 60.7
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.3e-27 126.3 104 62.5
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 1.3e-27 126.3 102 64.7
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 2.3e-27 125.6 101 64.4
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 2.9e-27 125.2 92 66.3
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 2.9e-27 125.2 101 64.4
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 3.8e-27 124.8 130 54.6
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 3.8e-27 124.8 92 70.7
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.0e-27 124.4 91 64.8
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.1e-26 123.2 92 69.6
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 1.5e-26 122.9 103 64.1
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 1.9e-26 122.5 102 60.8
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 7.2e-26 120.6 102 59.8
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 7.2e-26 120.6 93 63.4
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 4.7e-25 117.9 92 65.2
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.0e-24 116.7 90 66.7
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 1.8e-24 115.9 92 64.1
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 4.4e-23 111.3 93 62.4
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 7.5e-23 110.5 94 61.7
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 9.8e-23 110.2 91 60.4
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 9.8e-23 110.2 88 60.2
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.4e-21 104.4 82 65.9
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 4.5e-20 101.3 112 54.5
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.5e-18 96.3 75 66.7
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.5e-18 95.5 50 78.0
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 8.0e-17 90.5 76 67.1
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 8.0e-17 90.5 78 66.7
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 1.0e-16 90.1 99 48.5
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 6.8e-16 87.4 76 65.8
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 8.9e-16 87.0 78 61.5
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.5e-15 86.3 75 62.7
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 4.4e-15 84.7 97 50.5
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 7.5e-15 84.0 78 59.0
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.3e-14 83.2 103 49.5
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 2.2e-14 82.4 105 50.5
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 8.3e-14 80.5 75 58.7
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 8.6e-11 70.5 107 41.1
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.8e-09 65.5 93 44.1
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 3.6e-09 65.1 43 65.1
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 4.7e-09 64.7 34 76.5
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 2.3e-08 62.4 85 37.6
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 4.0e-08 61.6 52 57.7
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 8.9e-08 60.5 62 45.2
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 4.4e-07 58.2 54 57.4
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 4.4e-07 58.2 54 57.4
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 6.4e-06 54.3 62 51.6


User provided reference genes

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