Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 4.5e-226 787.7 433 100.0
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 8.1e-151 537.7 434 73.3
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.7e-148 530.0 431 72.4
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 8.9e-142 507.7 432 69.9
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.9e-139 500.0 425 71.1
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 3.2e-139 499.2 430 70.2
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 3.9e-137 492.3 428 68.2
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 9.6e-136 487.6 431 67.5
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.6e-135 486.9 431 67.1
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 2.4e-134 483.0 431 67.5
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 1.5e-133 480.3 431 67.1
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 9.9e-133 477.6 433 67.9
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 9.9e-133 477.6 428 66.6
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 9.3e-131 471.1 435 68.0
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 3.5e-130 469.2 431 66.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.5e-128 463.8 432 65.3
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 1.5e-128 463.8 428 65.7
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 4.3e-128 462.2 434 66.8
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.6e-127 460.3 435 65.1
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 5.3e-126 455.3 421 67.7
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.2e-125 454.1 441 65.5
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 4.5e-125 452.2 409 69.2
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 7.6e-125 451.4 426 66.7
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.7e-124 450.3 374 71.7
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 2.2e-124 449.9 425 65.9
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 2.9e-124 449.5 449 62.6
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 4.9e-124 448.7 435 63.7
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 6.4e-124 448.4 438 64.4
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 8.4e-124 448.0 433 64.2
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 8.4e-124 448.0 444 63.1
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 1.1e-123 447.6 429 66.0
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 2.4e-123 446.4 444 63.5
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 2.1e-122 443.4 425 64.9
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.1e-122 443.4 433 65.8
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.9e-121 439.1 435 62.5
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 8.7e-121 438.0 430 65.3
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.5e-120 437.2 382 69.9
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.9e-120 436.8 393 68.7
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.9e-120 436.8 450 58.2
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.9e-120 436.8 401 67.3
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.5e-120 436.4 382 69.9
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.3e-119 434.1 430 64.7
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.6e-119 433.7 393 67.9
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 2.1e-119 433.3 439 61.5
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 2.1e-119 433.3 463 57.7
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 3.7e-119 432.6 434 65.7
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 3.7e-119 432.6 373 70.0
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 3.1e-118 429.5 336 76.8
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 3.4e-117 426.0 422 63.3
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 7.6e-117 424.9 439 61.7
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 2.7e-114 416.4 384 67.7
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 5.1e-113 412.1 376 67.0
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 2.5e-112 409.8 437 61.8
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.3e-112 409.5 366 68.9
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 4.3e-112 409.1 374 66.6
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 4.3e-112 409.1 431 61.3
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.3e-111 407.5 375 66.7
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.7e-111 406.0 387 64.1
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 4.0e-110 402.5 333 72.4
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 4.0e-110 402.5 408 61.8
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 2.0e-109 400.2 430 62.1
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 2.6e-109 399.8 379 65.4
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 2.6e-109 399.8 401 63.1
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 5.8e-109 398.7 448 57.8
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.0e-108 397.9 440 56.8
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 1.0e-108 397.9 366 68.9
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 2.2e-108 396.7 361 70.1
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 2.2e-108 396.7 407 60.4
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.2e-108 396.7 367 68.4
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 2.9e-108 396.4 356 70.5
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 5.5e-107 392.1 371 67.7
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 2.7e-106 389.8 421 58.9
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 3.5e-106 389.4 371 67.9
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 7.9e-106 388.3 379 63.3
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 2.3e-105 386.7 360 69.7
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 3.0e-105 386.3 378 64.8
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 3.9e-105 386.0 368 67.4
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 6.7e-105 385.2 355 70.4
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 3.3e-104 382.9 370 68.6
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 5.7e-104 382.1 361 69.5
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 5.7e-104 382.1 361 69.5
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 5.7e-104 382.1 422 59.0
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 7.4e-104 381.7 370 68.4
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 7.4e-104 381.7 370 68.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 1.6e-103 380.6 356 70.2
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 3.7e-103 379.4 350 69.1
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.2e-101 374.4 371 63.6
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.5e-101 374.0 386 62.2
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 4.5e-101 372.5 343 70.0
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.0e-100 371.3 375 61.9
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 1.3e-100 370.9 343 70.6
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 7.2e-99 365.2 411 57.7
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.4e-97 360.9 384 60.2
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.4e-94 350.9 368 61.7
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.6e-93 346.7 255 71.8
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 2.9e-92 343.2 293 64.2
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 5.5e-91 339.0 243 74.9
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 3.6e-90 336.3 329 65.7
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 3.3e-88 329.7 356 61.2
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 7.4e-88 328.6 328 63.1
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 4.5e-85 319.3 395 55.4
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 3.8e-84 316.2 301 66.4
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 1.1e-80 304.7 293 70.0
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.5e-68 262.3 199 72.9
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 7.0e-62 242.3 235 61.3
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.6e-61 241.1 171 73.1
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 4.7e-58 229.6 219 68.5
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.2e-53 214.9 292 55.1
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 5.6e-51 206.1 328 46.3
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.0e-49 201.8 338 47.0
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.0e-49 201.8 315 49.2
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 4.4e-48 196.4 258 54.3
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 4.9e-47 193.0 313 45.4
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 7.8e-45 185.7 133 74.4
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.3e-44 184.1 221 49.3
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 1.9e-38 164.5 158 71.5
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.5e-35 154.8 126 69.0
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.5e-35 154.8 244 38.1
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 8.4e-31 139.0 207 40.1
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 4.7e-26 123.2 77 84.4
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.2e-21 108.6 160 51.9
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 2.6e-16 90.9 60 75.0
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 3.2e-14 84.0 136 39.0
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 5.3e-09 66.6 101 48.5


User provided reference genes

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