Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 3.5e-130 468.4 255 100.0
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 3.6e-106 388.7 256 83.6
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 9.1e-102 374.0 252 78.2
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.2e-101 373.6 253 80.6
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 4.5e-101 371.7 253 79.4
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 2.2e-100 369.4 256 79.3
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 2.9e-100 369.0 256 78.1
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.8e-100 368.6 249 79.9
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 7.2e-99 364.4 256 77.7
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.1e-98 362.8 255 74.5
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 2.7e-98 362.5 243 79.0
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 6.1e-98 361.3 246 80.1
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 8.0e-98 360.9 252 77.4
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.0e-97 360.5 254 76.8
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 1.0e-97 360.5 257 78.6
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.0e-97 360.5 256 77.3
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.4e-97 360.1 253 77.5
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.8e-97 359.8 253 75.9
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.3e-97 359.4 253 76.7
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.0e-97 359.0 244 79.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.9e-97 358.6 253 75.9
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 6.7e-97 357.8 254 76.4
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.1e-96 357.1 255 76.1
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.1e-96 357.1 253 75.9
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.5e-96 356.7 253 75.9
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.5e-96 356.7 266 73.7
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.0e-96 356.3 250 77.6
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 2.0e-96 356.3 255 75.7
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.4e-96 355.1 250 77.2
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.8e-94 349.7 253 74.7
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.4e-94 349.4 251 75.3
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 4.1e-94 348.6 255 72.5
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 5.9e-93 344.7 253 75.1
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.3e-92 343.6 251 73.7
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.9e-92 342.4 253 75.9
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 2.9e-92 342.4 257 74.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 3.8e-92 342.0 250 76.0
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 3.8e-92 342.0 255 71.4
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 6.5e-92 341.3 256 74.6
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 8.5e-92 340.9 255 75.7
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.9e-91 339.7 247 77.3
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.2e-91 339.0 253 76.3
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 7.2e-91 337.8 255 72.9
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 7.2e-91 337.8 248 74.2
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 9.4e-91 337.4 255 71.8
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.2e-90 337.0 255 71.0
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.6e-90 336.7 255 72.2
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.6e-90 336.7 251 72.1
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.6e-90 336.7 255 72.9
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 2.7e-90 335.9 250 76.0
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.6e-90 335.5 251 72.1
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 8.0e-90 334.3 252 72.6
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.0e-89 334.0 255 72.9
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 3.0e-89 332.4 250 75.2
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 4.0e-89 332.0 256 68.8
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 4.0e-89 332.0 254 73.6
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.2e-89 331.6 251 70.9
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 5.2e-89 331.6 258 71.7
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 6.8e-89 331.3 253 70.0
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 4.4e-88 328.6 240 74.6
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 5.7e-88 328.2 246 72.0
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.7e-87 326.6 257 70.8
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.2e-87 326.2 243 74.9
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.2e-87 326.2 257 71.6
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.8e-87 325.1 251 75.3
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 2.4e-86 322.8 256 73.0
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 4.1e-86 322.0 246 70.7
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 4.1e-86 322.0 202 78.7
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 5.3e-86 321.6 242 71.9
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.3e-86 321.6 255 71.4
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 5.3e-86 321.6 258 69.4
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 9.1e-86 320.9 256 71.9
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.0e-85 319.7 246 72.8
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.0e-85 319.7 246 72.8
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 2.0e-85 319.7 256 70.7
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.7e-85 319.3 243 68.7
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 3.5e-85 318.9 253 71.9
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 3.5e-85 318.9 258 70.9
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.5e-85 318.5 247 70.0
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 5.9e-85 318.2 205 76.1
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 7.7e-85 317.8 255 70.6
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 2.5e-83 312.8 242 70.2
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 4.2e-83 312.0 245 70.6
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 5.5e-83 311.6 347 53.6
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 7.2e-83 311.2 237 71.3
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 9.4e-83 310.8 249 70.3
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 2.1e-82 309.7 237 70.9
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 3.6e-82 308.9 260 66.9
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 3.6e-82 308.9 236 70.8
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 4.7e-82 308.5 246 69.9
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 8.0e-82 307.8 273 65.9
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.0e-81 307.4 248 68.5
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.2e-80 303.9 277 65.3
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.5e-80 303.5 248 68.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.0e-80 303.1 247 69.2
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.3e-79 300.4 246 67.5
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 2.2e-79 299.7 243 67.9
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 2.8e-79 299.3 253 67.6
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.7e-79 298.9 228 68.4
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 8.3e-79 297.7 297 63.3
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 7.0e-78 294.7 244 66.4
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 9.1e-78 294.3 205 72.7
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 1.2e-77 293.9 246 67.1
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 3.5e-77 292.4 244 67.2
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.3e-76 289.7 256 66.4
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.9e-76 289.3 256 66.4
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.1e-75 287.3 248 65.7
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.1e-75 287.3 247 70.0
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-74 283.5 253 65.6
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.1e-74 281.6 334 53.3
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 3.4e-72 275.8 252 61.1
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 7.0e-70 268.1 287 56.4
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 6.6e-68 261.5 250 60.8
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.1e-67 260.8 178 72.5
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.9e-63 246.1 249 55.8
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.9e-63 246.1 252 57.1
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 9.5e-59 231.1 246 58.1
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.2e-58 230.7 243 57.6
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.2e-58 230.7 247 57.1
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.6e-58 230.3 247 54.3
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 5.8e-56 221.9 222 55.4
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 6.4e-55 218.4 148 73.0
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 9.2e-54 214.5 136 77.2
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.2e-53 214.2 255 47.5
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 3.6e-50 202.6 132 75.8
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 5.8e-48 195.3 165 66.7
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 5.4e-46 188.7 149 76.5
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.5e-43 180.6 136 67.6
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 2.1e-42 176.8 145 63.4
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.4e-38 163.3 256 41.8
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 3.9e-36 156.0 120 79.2
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.1e-35 154.5 340 41.2
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-35 154.1 246 39.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 7.3e-35 151.8 193 52.8
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 7.3e-35 151.8 225 40.9
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 9.3e-30 134.8 242 37.6
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 2.1e-29 133.7 230 37.8
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.7e-28 130.6 108 69.4
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 6.9e-25 118.6 72 77.8
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 7.6e-24 115.2 92 62.0
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.2e-22 109.8 58 86.2
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.9e-19 100.5 79 62.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 2.1e-18 97.1 79 60.8
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.0e-16 90.5 82 70.7
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 4.8e-10 69.3 173 33.5
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 8.2e-10 68.6 49 69.4
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 2.0e-08 63.9 64 53.1
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.6e-08 62.0 184 29.3
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.3e-07 61.2 34 79.4


User provided reference genes

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