Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 1.7e-285 985.3 495 100.0
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 1.8e-239 832.4 495 83.6
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 1.5e-238 829.3 495 82.4
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 4.1e-223 778.1 469 82.3
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 1.9e-217 759.2 491 74.5
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 1.3e-216 756.5 492 74.2
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 1.8e-215 752.7 491 74.1
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 2.4e-215 752.3 489 74.6
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 6.9e-215 750.7 492 74.2
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 6.9e-215 750.7 491 73.7
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.6e-214 748.8 492 73.8
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.2e-213 745.7 492 73.6
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 1.1e-212 743.4 491 74.3
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 1.0e-210 736.9 483 74.1
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 3.0e-210 735.3 491 72.7
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 2.6e-209 732.3 488 73.2
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 5.7e-209 731.1 491 73.3
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 1.4e-207 726.5 491 71.5
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 6.9e-207 724.2 492 72.6
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 7.7e-206 720.7 468 73.9
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 1.3e-205 719.9 471 75.8
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 1.3e-205 719.9 490 71.6
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 2.5e-204 715.7 492 72.2
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 1.6e-203 713.0 491 71.7
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 2.1e-203 712.6 491 70.9
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 2.7e-203 712.2 492 72.0
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 6.1e-203 711.1 493 69.4
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 6.1e-203 711.1 468 73.5
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 1.4e-202 709.9 489 72.8
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 3.9e-202 708.4 471 77.7
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.5e-201 706.4 505 68.9
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 3.3e-201 705.3 488 71.3
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 4.4e-201 704.9 493 69.4
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.7e-201 704.5 506 68.8
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.7e-201 704.5 506 68.8
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.7e-201 704.5 506 68.8
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 7.4e-201 704.1 492 69.3
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 9.7e-201 703.7 484 70.0
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 1.3e-200 703.4 491 69.5
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 8.2e-200 700.7 491 69.2
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 1.4e-199 699.9 468 72.9
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 4.1e-199 698.4 497 70.6
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 5.3e-199 698.0 491 68.6
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 5.3e-199 698.0 491 69.5
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 7.0e-199 697.6 491 70.1
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 2.9e-197 692.2 491 68.0
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 1.5e-196 689.9 491 69.0
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 1.9e-196 689.5 496 69.0
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 3.2e-196 688.7 491 70.3
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 9.4e-196 687.2 491 67.8
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 9.4e-196 687.2 491 67.4
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 3.6e-195 685.3 491 68.0
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 4.7e-195 684.9 496 67.7
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 6.1e-195 684.5 496 67.7
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 4.0e-194 681.8 492 67.5
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 4.0e-194 681.8 492 67.5
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 6.7e-194 681.0 491 68.4
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 1.3e-192 676.8 542 64.0
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 2.8e-192 675.6 491 67.6
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 1.1e-191 673.7 497 66.8
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 1.1e-191 673.7 542 63.8
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 7.7e-190 667.5 458 71.6
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 7.7e-190 667.5 499 67.5
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.5e-188 663.3 522 65.9
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 5.5e-188 661.4 434 76.0
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 9.4e-188 660.6 482 66.2
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.6e-187 659.8 494 66.0
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 1.0e-186 657.1 523 62.7
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 1.0e-186 657.1 491 65.2
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 1.0e-186 657.1 461 70.5
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 1.2e-182 643.7 609 57.6
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.7e-181 639.8 522 62.5
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 1.7e-181 639.8 519 63.2
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 2.3e-181 639.4 487 64.9
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 2.9e-181 639.0 454 67.4
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 3.8e-181 638.6 475 64.8
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 3.0e-178 629.0 491 62.7
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 1.4e-175 620.2 409 72.9
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 1.0e-173 614.0 492 64.2
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 1.7e-173 613.2 503 61.6
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 2.0e-169 599.7 491 61.5
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 2.0e-169 599.7 493 59.8
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 7.0e-167 591.3 412 70.9
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 9.8e-161 570.9 431 66.4
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 2.2e-160 569.7 514 56.8
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 9.2e-159 564.3 394 69.5
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 1.1e-156 557.4 511 57.3
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 1.7e-152 543.5 487 60.0
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 1.3e-149 533.9 482 55.4
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 3.9e-149 532.3 396 66.4
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 1.1e-146 524.2 328 80.2
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 2.4e-146 523.1 492 56.3
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 8.4e-144 514.6 330 80.0
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 1.2e-142 510.8 687 44.8
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 1.6e-142 510.4 484 52.3
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 6.2e-139 498.4 483 50.9
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 1.8e-138 496.9 532 53.8
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 5.2e-138 495.4 330 77.0
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 4.0e-130 469.2 984 34.8
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 5.1e-125 452.2 503 52.9
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 7.6e-121 438.3 433 51.7
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 6.4e-120 435.3 469 51.4
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 7.4e-116 421.8 302 71.9
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 1.3e-107 394.4 347 58.2
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 5.7e-100 369.0 438 51.4
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 1.5e-84 317.8 251 63.7
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 9.4e-79 298.5 197 74.6
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 2.7e-73 280.4 546 34.8
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 2.1e-70 270.8 305 54.1
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.8e-64 250.0 197 65.5
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 1.9e-63 247.7 482 35.7
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 1.4e-58 231.5 183 60.1
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 3.5e-57 226.9 161 67.7
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 1.5e-47 194.9 161 64.0
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 1.4e-42 178.3 114 66.7
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 1.9e-39 167.9 114 73.7
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 2.6e-28 131.0 150 46.7
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 9.2e-26 122.5 68 79.4
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 1.3e-24 118.6 82 73.2
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 4.2e-18 97.1 66 72.7
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 4.3e-15 87.0 51 78.4
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 3.6e-14 84.0 50 72.0
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 8.1e-14 82.8 79 44.3
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.9e-13 79.7 101 44.6
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 2.9e-11 74.3 45 75.6
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 3.9e-08 63.9 121 35.5
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 3.3e-07 60.8 148 29.7
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.6e-07 60.1 138 30.4
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.3e-06 58.9 138 29.7
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.6e-06 58.5 126 32.5
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.7e-06 57.4 273 23.4
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.7e-06 57.4 273 23.4
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 6.2e-06 56.6 221 28.5
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 6.2e-06 56.6 138 29.7
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 8.1e-06 56.2 154 30.5


User provided reference genes

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