Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 6.7e-179 630.6 318 100.0
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 4.6e-127 458.4 300 78.0
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 8.6e-126 454.1 312 78.2
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 1.6e-116 423.3 313 74.1
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 2.8e-116 422.5 299 75.9
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 1.1e-115 420.6 294 75.9
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 3.1e-115 419.1 309 72.2
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 5.2e-115 418.3 298 74.8
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 5.2e-115 418.3 298 74.8
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 8.9e-115 417.5 315 72.7
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 3.8e-113 412.1 299 73.2
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 4.1e-112 408.7 297 74.1
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 7.1e-112 407.9 314 70.7
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 9.2e-112 407.5 327 70.0
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 6.0e-111 404.8 265 78.5
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 3.0e-110 402.5 310 70.3
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 1.1e-109 400.6 304 71.7
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 4.3e-109 398.7 261 79.3
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 7.3e-109 397.9 313 69.3
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 7.3e-109 397.9 251 79.3
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 9.6e-109 397.5 246 80.9
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 9.6e-109 397.5 274 75.5
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 9.6e-109 397.5 309 70.2
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 2.1e-108 396.4 306 69.9
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 2.1e-108 396.4 267 76.8
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 2.8e-108 396.0 300 70.7
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 2.8e-108 396.0 292 72.3
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 4.7e-108 395.2 231 85.3
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 6.2e-108 394.8 254 81.1
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 1.1e-107 394.0 234 84.2
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 3.1e-107 392.5 247 81.4
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 4.0e-107 392.1 294 71.4
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 1.5e-106 390.2 244 80.7
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 4.4e-106 388.7 301 69.4
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.9e-105 386.0 235 82.1
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.8e-105 385.6 235 82.6
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 6.4e-105 384.8 294 71.1
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 1.1e-104 384.0 239 80.3
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 1.4e-104 383.6 297 69.0
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 1.9e-104 383.3 315 67.6
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 2.4e-104 382.9 304 69.7
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 3.2e-104 382.5 247 77.7
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 4.2e-104 382.1 248 80.6
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 9.3e-104 380.9 287 69.3
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 1.6e-103 380.2 300 67.0
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 1.6e-103 380.2 253 76.3
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 2.1e-103 379.8 237 80.6
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 2.1e-103 379.8 240 80.0
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 3.5e-103 379.0 312 66.7
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 4.6e-103 378.6 290 69.7
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 6.0e-103 378.3 287 69.0
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 7.8e-103 377.9 234 80.3
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 1.0e-102 377.5 220 85.0
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 1.0e-102 377.5 318 68.2
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 2.3e-102 376.3 241 78.0
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.0e-102 375.9 228 82.9
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 3.9e-102 375.6 289 68.5
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 6.6e-102 374.8 227 82.8
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 1.1e-101 374.0 299 66.6
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 1.1e-101 374.0 252 75.8
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 1.1e-101 374.0 293 69.3
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.9e-101 373.2 248 75.4
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 1.9e-101 373.2 279 71.3
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 2.5e-101 372.9 243 79.8
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 4.3e-101 372.1 277 71.1
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 7.3e-101 371.3 241 78.4
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 7.3e-101 371.3 248 75.0
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 9.6e-101 370.9 241 77.2
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 1.6e-100 370.2 248 75.0
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 1.6e-100 370.2 241 76.8
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 2.8e-100 369.4 299 67.6
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 6.2e-100 368.2 251 74.9
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 1.1e-99 367.5 236 77.1
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 4.0e-99 365.5 308 65.9
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 3.4e-98 362.5 250 75.2
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 1.3e-97 360.5 310 64.2
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 1.4e-96 357.1 240 75.8
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 1.9e-96 356.7 227 78.9
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 7.1e-96 354.8 255 72.2
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 9.3e-96 354.4 252 72.6
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 1.2e-95 354.0 272 70.2
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.8e-94 350.1 261 69.3
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 3.0e-94 349.4 211 82.0
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 8.7e-94 347.8 204 84.3
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 1.9e-93 346.7 237 73.4
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 4.3e-93 345.5 245 73.1
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 3.7e-92 342.4 217 80.2
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 3.7e-92 342.4 314 61.8
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 4.0e-91 339.0 217 79.3
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 2.6e-90 336.3 226 74.8
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 7.6e-90 334.7 274 66.1
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 2.2e-89 333.2 240 71.7
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 4.2e-88 328.9 385 52.7
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 3.5e-87 325.9 271 68.3
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 6.0e-87 325.1 226 70.8
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 6.7e-86 321.6 237 71.7
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 6.7e-86 321.6 314 62.7
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 8.7e-86 321.2 216 77.3
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.1e-85 320.9 240 69.2
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 4.3e-85 318.9 235 69.8
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 2.0e-82 310.1 193 81.9
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 4.9e-81 305.4 311 57.2
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 5.5e-80 302.0 193 77.2
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 3.0e-78 296.2 251 64.1
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 9.0e-75 284.6 251 62.9
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 2.9e-73 279.6 253 59.3
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 2.3e-70 270.0 204 71.1
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 3.0e-70 269.6 266 52.3
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 9.7e-69 264.6 172 75.6
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 6.3e-68 261.9 194 73.2
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 6.5e-65 251.9 202 67.3
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 2.1e-55 220.3 176 61.9
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 5.3e-51 205.7 168 66.7
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 7.0e-43 178.7 164 61.0
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 2.9e-41 173.3 170 58.8
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 7.2e-40 168.7 104 78.8
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 9.4e-40 168.3 116 74.1
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 4.7e-39 166.0 168 57.1
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 4.1e-27 126.3 302 36.1
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 2.0e-26 124.0 267 39.0
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 4.3e-24 116.3 148 45.3
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 7.3e-24 115.5 195 43.1
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 1.8e-22 110.9 116 57.8
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 6.8e-22 109.0 248 31.9
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 7.5e-21 105.5 144 45.8
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 3.7e-20 103.2 221 32.1
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 7.0e-19 99.0 66 68.2
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 4.6e-18 96.3 56 78.6
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 1.2e-15 88.2 57 71.9
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 2.3e-14 84.0 48 81.2
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 1.4e-11 74.7 104 49.0
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 6.0e-10 69.3 62 64.5


User provided reference genes

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