Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 6.1e-49 197.2 103 100.0
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 5.4e-29 131.0 103 69.9
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.7e-27 125.9 104 68.3
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 9.9e-23 110.2 104 58.7
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.2e-21 105.1 85 65.9
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 4.2e-21 104.8 104 57.7
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 9.2e-21 103.6 104 54.8
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.6e-20 102.8 104 56.7
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 4.6e-20 101.3 105 55.2
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 6.0e-20 100.9 105 56.2
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 7.8e-20 100.5 106 57.5
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.0e-19 100.1 105 55.2
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.3e-19 99.8 106 53.8
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.3e-19 99.8 109 55.0
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.3e-19 99.8 109 56.0
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.3e-19 99.8 82 67.1
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 3.0e-19 98.6 106 54.7
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 6.6e-19 97.4 103 58.3
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.6e-19 97.4 104 54.8
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 6.6e-19 97.4 104 54.8
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 8.7e-19 97.1 104 53.8
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 8.7e-19 97.1 106 53.8
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.9e-18 95.9 106 52.8
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.9e-18 95.9 106 53.8
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 3.3e-18 95.1 107 54.2
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 3.3e-18 95.1 106 50.0
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 9.6e-18 93.6 97 55.7
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 2.1e-17 92.4 108 52.8
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 2.1e-17 92.4 104 53.8
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.8e-17 92.0 104 55.8
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.6e-17 91.7 104 56.7
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 4.8e-17 91.3 103 52.4
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 6.2e-17 90.9 105 47.6
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 6.2e-17 90.9 105 47.6
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 8.1e-17 90.5 99 54.5
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 8.1e-17 90.5 106 54.7
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 1.4e-16 89.7 107 53.3
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 2.4e-16 89.0 99 52.5
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.9e-16 87.4 96 52.1
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 9.0e-16 87.0 107 48.6
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 9.0e-16 87.0 96 52.1
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.5e-15 86.3 78 64.1
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.6e-15 85.5 94 55.3
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 3.4e-15 85.1 84 58.3
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 3.4e-15 85.1 84 58.3
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 4.4e-15 84.7 107 49.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 7.6e-15 84.0 79 55.7
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.6e-15 84.0 105 53.3
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 7.6e-15 84.0 94 52.1
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.7e-14 82.8 107 49.5
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.7e-14 82.8 107 49.5
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.7e-14 82.8 107 49.5
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 2.2e-14 82.4 87 57.5
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.2e-14 82.4 99 47.5
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.9e-14 82.0 106 50.0
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 3.8e-14 81.6 82 54.9
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.8e-14 81.6 69 60.9
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 3.8e-14 81.6 93 53.8
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.8e-14 81.6 85 54.1
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 4.9e-14 81.3 91 51.6
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 4.9e-14 81.3 112 50.0
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.9e-14 81.3 69 59.4
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 4.9e-14 81.3 90 52.2
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 4.9e-14 81.3 97 51.5
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 4.9e-14 81.3 101 51.5
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.4e-14 80.9 91 51.6
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 8.4e-14 80.5 91 49.5
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 8.4e-14 80.5 105 49.5
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 8.4e-14 80.5 107 47.7
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.4e-13 79.7 86 53.5
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.4e-13 79.7 87 51.7
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 2.4e-13 79.0 76 59.2
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 2.4e-13 79.0 80 52.5
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.4e-13 79.0 102 52.9
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.4e-13 79.0 87 52.9
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 3.2e-13 78.6 108 48.1
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.2e-13 78.6 108 42.6
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 3.2e-13 78.6 80 52.5
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 3.2e-13 78.6 92 50.0
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 3.2e-13 78.6 101 43.6
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 5.4e-13 77.8 106 49.1
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 5.4e-13 77.8 108 42.6
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 5.4e-13 77.8 82 54.9
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 7.1e-13 77.4 108 46.3
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 7.1e-13 77.4 80 52.5
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 7.1e-13 77.4 86 46.5
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 7.1e-13 77.4 84 51.2
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 7.1e-13 77.4 103 46.6
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 9.3e-13 77.0 93 49.5
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.2e-12 76.6 72 54.2
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.2e-12 76.6 76 57.9
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.2e-12 76.6 89 51.7
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 2.1e-12 75.9 101 45.5
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.1e-12 75.9 108 42.6
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 2.1e-12 75.9 84 53.6
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 2.1e-12 75.9 82 51.2
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 2.7e-12 75.5 106 47.2
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.7e-12 75.5 90 47.8
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.7e-12 75.5 75 54.7
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.7e-12 75.5 75 54.7
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 3.5e-12 75.1 87 54.0
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 3.5e-12 75.1 97 47.4
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 3.5e-12 75.1 78 56.4
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.6e-12 74.7 69 56.5
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.0e-12 74.3 103 45.6
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.0e-12 74.3 82 47.6
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 6.0e-12 74.3 95 45.3
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 6.0e-12 74.3 79 49.4
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 7.8e-12 73.9 107 46.7
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.8e-12 73.9 100 45.0
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 7.8e-12 73.9 84 48.8
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 7.8e-12 73.9 98 45.9
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.0e-11 73.6 103 45.6
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.0e-11 73.6 103 45.6
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 2.3e-11 72.4 78 57.7
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.3e-11 72.4 97 46.4
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 2.3e-11 72.4 80 48.8
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 3.0e-11 72.0 53 69.8
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 3.0e-11 72.0 100 44.0
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 3.9e-11 71.6 89 50.6
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 3.9e-11 71.6 53 67.9
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 5.1e-11 71.2 80 48.8
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 6.6e-11 70.9 91 49.5
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 6.6e-11 70.9 89 44.9
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 8.7e-11 70.5 75 50.7
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.1e-10 70.1 67 53.7
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 1.1e-10 70.1 100 49.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.5e-10 69.7 84 50.0
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.9e-10 69.3 40 85.0
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 1.9e-10 69.3 89 49.4
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.3e-10 68.6 93 41.9
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.3e-10 68.6 79 46.8
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 4.3e-10 68.2 80 50.0
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 4.3e-10 68.2 102 43.1
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 5.6e-10 67.8 86 53.5
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 5.6e-10 67.8 53 60.4
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 5.6e-10 67.8 95 42.1
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 1.6e-09 66.2 75 49.3
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.6e-09 66.2 83 45.8
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 1.6e-09 66.2 53 64.2
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 2.8e-09 65.5 92 45.7
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.8e-09 65.5 77 50.6
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 4.8e-09 64.7 103 42.7
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 6.2e-09 64.3 74 47.3
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-08 63.5 95 40.0
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.8e-08 62.8 72 47.2
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.8e-08 62.8 72 52.8
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 2.4e-08 62.4 104 46.2
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 3.1e-08 62.0 65 50.8
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.0e-08 60.5 92 41.3
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.0e-07 59.3 52 51.9
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 7.6e-07 57.4 100 39.0
Lsat_1_v5_gn_7_75620 Lactuca sativa HOM05D004289 ORTHO05D233411 2.2e-06 55.8 103 43.7
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 3.8e-06 55.1 84 44.0
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.9e-06 54.7 69 40.6
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 8.4e-06 53.9 65 40.0


User provided reference genes

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