Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.3e-92 343.2 197 100.0
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 2.5e-59 232.6 199 67.3
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 7.1e-54 214.5 199 66.8
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 9.3e-46 187.6 199 52.3
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 9.6e-43 177.6 201 55.7
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 5.3e-41 171.8 202 56.9
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 5.8e-40 168.3 198 57.1
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 3.8e-39 165.6 205 51.2
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 5.5e-38 161.8 199 53.3
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.6e-37 160.2 205 51.7
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.3e-36 157.1 200 49.5
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 3.0e-36 156.0 199 50.3
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.5e-35 153.7 197 50.8
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.5e-35 153.7 201 54.7
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 4.3e-35 152.1 205 47.8
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 7.4e-35 151.4 201 54.2
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 9.7e-35 151.0 203 53.2
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.6e-34 150.2 208 52.9
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.8e-34 149.4 201 49.8
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.7e-34 149.1 205 47.8
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.7e-34 149.1 205 47.8
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 4.8e-34 148.7 201 46.8
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 8.2e-34 147.9 204 49.5
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.8e-33 146.7 198 47.5
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 3.1e-33 146.0 203 50.2
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 4.1e-33 145.6 206 49.5
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 9.0e-33 144.4 170 51.8
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.4e-32 142.5 203 47.8
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.0e-31 141.0 207 50.2
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 3.8e-31 139.0 198 46.0
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.1e-30 137.5 176 51.1
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.9e-30 136.7 160 49.4
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 4.2e-30 135.6 208 44.7
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.2e-29 134.0 202 54.5
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-29 133.7 200 46.0
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.7e-29 132.9 176 48.3
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 4.6e-29 132.1 203 45.8
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 6.1e-29 131.7 201 47.3
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 6.1e-29 131.7 204 46.6
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.0e-28 131.0 202 45.0
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.9e-28 129.0 203 48.3
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 5.1e-28 128.6 204 47.5
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 6.7e-28 128.3 210 51.0
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 2.0e-27 126.7 222 41.0
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 3.3e-27 125.9 200 44.0
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.3e-27 125.9 210 49.5
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 9.7e-27 124.4 204 44.1
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.2e-26 123.2 208 43.3
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 3.7e-26 122.5 201 46.3
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.8e-26 122.1 209 45.5
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.8e-26 122.1 176 46.0
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 6.3e-26 121.7 199 49.7
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 6.3e-26 121.7 200 49.5
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-25 120.9 208 50.0
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 5.3e-25 118.6 202 49.0
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.9e-25 118.2 209 45.9
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.1e-25 117.9 198 46.0
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.2e-24 117.5 223 44.4
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.2e-24 117.5 206 44.2
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.2e-24 117.5 148 48.0
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 2.0e-24 116.7 207 44.9
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 2.6e-24 116.3 168 45.8
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 4.5e-24 115.5 207 44.4
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.9e-24 115.2 216 47.7
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.7e-24 114.8 208 48.6
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.0e-23 114.4 202 47.5
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.3e-23 114.0 207 41.1
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.7e-23 113.6 153 48.4
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.7e-23 113.6 208 43.3
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 2.9e-23 112.8 205 43.9
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 3.8e-23 112.5 145 47.6
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 5.0e-23 112.1 172 42.4
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 6.5e-23 111.7 168 45.2
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 3.2e-22 109.4 199 43.7
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 5.5e-22 108.6 207 41.5
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 9.4e-22 107.8 216 47.7
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.1e-21 106.7 213 43.2
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 2.7e-21 106.3 214 42.1
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.6e-21 105.9 207 43.5
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 2.3e-20 103.2 198 42.9
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 3.9e-20 102.4 128 50.8
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 3.9e-20 102.4 197 38.1
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 6.7e-20 101.7 208 40.4
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.1e-19 100.9 148 42.6
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.1e-19 100.9 172 39.5
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.0e-19 100.1 209 45.5
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 4.4e-19 99.0 101 60.4
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 5.7e-19 98.6 195 43.6
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.7e-19 98.6 207 43.5
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 7.4e-19 98.2 207 43.5
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-18 97.4 209 43.1
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.7e-18 97.1 218 43.6
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 2.2e-18 96.7 207 37.2
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.8e-18 96.3 207 40.1
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.8e-18 96.3 210 44.8
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 6.3e-18 95.1 154 54.5
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.3e-18 95.1 219 42.0
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 6.3e-18 95.1 174 39.1
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 6.3e-18 95.1 180 42.8
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.1e-17 94.4 172 39.0
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.8e-17 93.6 149 45.0
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.8e-17 93.6 207 43.5
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.8e-17 93.6 218 39.9
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 5.3e-17 92.0 205 38.5
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 5.3e-17 92.0 210 36.7
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 5.3e-17 92.0 171 40.9
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 7.0e-17 91.7 205 36.1
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 7.0e-17 91.7 112 53.6
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-16 90.5 208 36.1
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 2.0e-16 90.1 199 43.7
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.0e-16 90.1 127 46.5
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 4.5e-16 89.0 131 42.7
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 4.5e-16 89.0 203 37.4
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 4.5e-16 89.0 209 36.4
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 5.9e-16 88.6 193 38.3
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.7e-15 87.0 183 41.0
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 3.8e-15 85.9 170 38.2
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 6.5e-15 85.1 204 39.2
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.1e-14 84.3 208 34.1
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-14 84.0 206 35.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-14 84.0 206 35.4
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-14 84.0 208 34.1
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-14 84.0 208 34.1
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.5e-14 84.0 206 35.4
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 2.5e-14 83.2 205 39.0
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.5e-14 83.2 150 45.3
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 3.2e-14 82.8 80 58.8
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 4.2e-14 82.4 208 33.7
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 4.2e-14 82.4 208 33.7
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.2e-14 82.4 192 38.0
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 5.5e-14 82.0 168 37.5
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 9.4e-14 81.3 206 35.0
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 9.4e-14 81.3 158 45.6
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.2e-13 80.9 168 38.1
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.2e-13 80.9 213 35.2
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.2e-13 80.9 205 38.5
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.1e-13 80.1 204 33.8
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 2.7e-13 79.7 174 36.8
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 3.6e-13 79.3 208 33.7
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 4.7e-13 79.0 208 33.7
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 6.1e-13 78.6 208 33.7
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.0e-12 77.8 168 39.3
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.4e-12 77.4 199 42.7
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.4e-12 77.4 90 48.9
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 1.4e-12 77.4 131 41.2
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.8e-12 77.0 144 38.9
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.3e-12 76.6 192 34.9
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.3e-10 70.9 210 34.8
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-10 70.5 135 41.5
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 2.8e-10 69.7 143 39.9
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 6.3e-10 68.6 92 47.8
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 6.3e-10 68.6 201 30.8
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 8.2e-10 68.2 174 34.5
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.8e-09 67.0 136 35.3
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-09 66.6 154 33.8
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-09 66.6 104 46.2
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 2.4e-09 66.6 189 33.3
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-09 66.2 117 42.7
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 3.1e-09 66.2 103 48.5
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 4.1e-09 65.9 203 36.0
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 9.1e-09 64.7 208 35.1
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.6e-08 63.9 103 46.6
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.6e-08 63.9 152 34.2
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.6e-08 63.9 103 46.6
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.6e-08 63.9 208 37.0
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 3.5e-08 62.8 103 46.6
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 3.5e-08 62.8 118 39.0
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 1.3e-07 60.8 169 35.5
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 3.8e-07 59.3 198 32.3
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.9e-06 57.0 98 43.9
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 9.4e-06 54.7 195 30.3


User provided reference genes

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