Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 6.4e-108 394.0 192 100.0
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 4.6e-58 228.4 161 68.9
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 8.8e-57 224.2 192 57.3
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.7e-52 209.9 162 66.0
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 5.0e-52 208.4 199 56.3
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 9.4e-51 204.1 161 64.0
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 7.9e-50 201.1 193 56.0
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 1.0e-49 200.7 155 65.8
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 5.1e-49 198.4 188 58.0
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 5.1e-49 198.4 141 68.8
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 5.7e-48 194.9 191 57.6
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 7.4e-48 194.5 182 58.8
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.2e-47 193.0 170 59.4
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.3e-47 191.4 175 58.3
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.3e-47 191.4 200 54.5
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 6.3e-47 191.4 159 61.6
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 8.2e-47 191.0 180 56.7
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 8.2e-47 191.0 179 58.7
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 8.2e-47 191.0 175 58.9
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 8.2e-47 191.0 144 66.0
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 8.2e-47 191.0 159 62.3
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 1.1e-46 190.7 188 58.5
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 1.1e-46 190.7 157 63.1
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.1e-46 190.7 184 57.1
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 1.1e-46 190.7 157 63.7
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.4e-46 190.3 149 63.8
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.4e-46 190.3 185 57.3
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 1.8e-46 189.9 141 66.7
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 1.8e-46 189.9 187 53.5
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 3.1e-46 189.1 185 56.2
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 3.1e-46 189.1 140 67.1
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 4.1e-46 188.7 191 53.9
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 4.1e-46 188.7 106 81.1
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 5.3e-46 188.3 101 86.1
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.2e-45 187.2 185 55.7
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 1.2e-45 187.2 106 81.1
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.2e-45 187.2 106 81.1
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 1.5e-45 186.8 130 69.2
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 1.5e-45 186.8 144 63.9
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 2.0e-45 186.4 106 82.1
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 2.0e-45 186.4 200 54.0
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 2.6e-45 186.0 172 58.1
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 2.6e-45 186.0 187 56.7
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.6e-45 186.0 178 59.0
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 3.4e-45 185.7 141 64.5
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 4.5e-45 185.3 101 82.2
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 5.9e-45 184.9 179 55.9
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 5.9e-45 184.9 159 61.0
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 5.9e-45 184.9 159 61.0
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 5.9e-45 184.9 103 82.5
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 5.9e-45 184.9 178 58.4
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 5.9e-45 184.9 151 64.9
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 7.7e-45 184.5 143 66.4
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.0e-44 184.1 135 65.9
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.0e-44 184.1 140 67.1
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 1.7e-44 183.3 171 57.3
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 2.2e-44 183.0 139 66.9
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 2.9e-44 182.6 186 52.7
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 2.9e-44 182.6 127 68.5
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 2.9e-44 182.6 171 59.1
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 2.9e-44 182.6 126 68.3
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 6.5e-44 181.4 142 62.7
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 8.5e-44 181.0 127 67.7
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 8.5e-44 181.0 127 67.7
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 8.5e-44 181.0 127 67.7
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.1e-43 180.6 102 80.4
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.1e-43 180.6 127 67.7
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 1.1e-43 180.6 126 65.9
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.4e-43 180.3 171 57.9
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 1.9e-43 179.9 134 67.2
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.9e-43 179.9 101 82.2
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 1.9e-43 179.9 139 64.0
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 2.5e-43 179.5 179 55.3
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 3.2e-43 179.1 125 68.8
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 9.4e-43 177.6 104 77.9
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 2.1e-42 176.4 141 65.2
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 4.7e-42 175.3 167 56.9
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 4.7e-42 175.3 101 79.2
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 4.7e-42 175.3 134 67.2
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 8.0e-42 174.5 104 75.0
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 1.4e-41 173.7 190 50.0
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 5.7e-40 168.3 136 61.0
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.2e-39 166.4 144 57.6
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 2.2e-39 166.4 101 73.3
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.8e-39 166.0 187 52.4
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 1.0e-36 157.5 142 60.6
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 1.3e-36 157.1 85 83.5
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 2.9e-36 156.0 101 69.3
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 9.4e-35 151.0 144 53.5
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 6.1e-34 148.3 175 48.6
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 8.0e-34 147.9 82 81.7
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 2.3e-33 146.4 162 48.1
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.5e-32 143.7 76 84.2
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 3.3e-32 142.5 105 67.6
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 3.3e-32 142.5 80 77.5
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 4.5e-29 132.1 95 68.4
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 5.9e-29 131.7 123 59.3
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.7e-28 130.2 185 45.9
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.5e-27 127.1 97 57.7
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 9.4e-27 124.4 98 59.2
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.7e-26 122.9 121 49.6
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 4.4e-24 115.5 127 45.7
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 1.7e-23 113.6 91 54.9
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 2.4e-22 109.8 71 71.8
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 5.9e-21 105.1 56 85.7
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 7.7e-21 104.8 49 89.8
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 7.7e-21 104.8 139 44.6
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.9e-19 100.1 83 63.9
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.9e-19 100.1 83 63.9
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.9e-19 100.1 83 63.9
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.9e-19 100.1 83 63.9
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 1.6e-18 97.1 59 74.6
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 4.7e-18 95.5 87 55.2
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 4.7e-18 95.5 132 47.0
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 6.1e-18 95.1 49 85.7
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 1.8e-17 93.6 94 55.3
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 3.4e-16 89.4 52 78.8
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 7.5e-16 88.2 52 73.1
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 6.3e-15 85.1 104 45.2
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-12 77.8 77 53.2
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 2.8e-10 69.7 49 65.3
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.9e-06 57.0 40 70.0
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 3.2e-06 56.2 72 37.5
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 5.4e-06 55.5 41 68.3
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 5.4e-06 55.5 41 68.3
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 5.4e-06 55.5 41 68.3
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 5.4e-06 55.5 41 68.3
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 5.4e-06 55.5 114 36.0
arahy.Tifrunner.gnm1.ann1.6D2PAS Arachis hypogaea HOM05D005851 ORTHO05D007137 9.2e-06 54.7 41 68.3


User provided reference genes

Program Settings