Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 0.0e+00 1350.1 814 100.0
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 2.4e-257 892.5 834 71.9
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.5e-235 820.1 853 62.0
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 2.8e-213 746.1 824 63.8
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 6.1e-200 701.8 799 63.8
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.0e-199 701.0 856 60.4
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 4.5e-195 685.6 843 59.5
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 1.0e-194 684.5 851 59.5
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.9e-193 680.2 851 59.1
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 1.9e-193 680.2 854 58.5
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 7.2e-193 678.3 854 58.8
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 4.7e-192 675.6 776 62.8
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 1.4e-191 674.1 814 60.1
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 1.4e-191 674.1 830 60.2
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.6e-190 669.8 859 57.9
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 6.3e-189 665.2 849 58.7
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 1.1e-188 664.5 860 57.9
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 1.0e-186 657.9 789 60.3
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 2.9e-186 656.4 853 52.6
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 8.8e-183 644.8 847 56.6
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 2.6e-182 643.3 852 56.7
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 9.1e-180 634.8 812 57.3
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 2.7e-176 623.2 764 58.9
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 1.4e-175 620.9 845 56.2
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 1.7e-173 614.0 851 55.6
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 2.2e-173 613.6 797 56.7
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 3.7e-173 612.8 824 58.1
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 6.3e-173 612.1 845 55.7
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 8.3e-173 611.7 853 54.0
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 8.3e-173 611.7 805 57.3
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.8e-172 610.5 804 57.1
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.8e-172 610.5 809 56.2
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 4.1e-172 609.4 783 56.3
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 4.1e-172 609.4 783 56.3
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 7.0e-172 608.6 810 55.4
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 1.6e-171 607.4 783 56.8
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 1.6e-171 607.4 783 56.8
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 3.5e-171 606.3 806 56.9
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 5.9e-171 605.5 791 58.0
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 2.2e-170 603.6 847 53.7
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 6.5e-170 602.1 697 63.3
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 2.5e-169 600.1 769 59.2
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 5.5e-169 599.0 864 47.5
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 5.5e-169 599.0 750 60.7
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 9.5e-169 598.2 780 57.2
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 1.6e-168 597.4 787 57.2
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 2.1e-168 597.0 784 56.1
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 2.8e-168 596.7 807 55.5
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 4.7e-168 595.9 808 55.8
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 4.0e-167 592.8 780 51.2
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 2.0e-166 590.5 858 51.7
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 2.6e-166 590.1 843 53.6
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 7.5e-166 588.6 781 55.3
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 4.9e-165 585.9 802 57.5
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 4.9e-165 585.9 794 55.8
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 1.4e-164 584.3 784 56.1
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 2.0e-163 580.5 733 57.8
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 7.8e-163 578.6 814 47.9
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 6.6e-162 575.5 824 50.2
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 1.2e-158 564.7 822 54.6
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 7.5e-158 562.0 804 55.3
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.4e-156 557.0 817 47.6
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 5.9e-155 552.4 809 54.0
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 7.8e-155 552.0 805 54.3
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 3.0e-154 550.1 809 52.9
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 3.0e-154 550.1 807 53.8
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 8.6e-154 548.5 843 52.0
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 5.6e-153 545.8 777 47.2
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 9.5e-153 545.0 777 47.2
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 1.2e-152 544.7 728 54.8
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 1.2e-152 544.7 842 52.1
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 4.7e-152 542.7 798 54.0
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 4.0e-151 539.7 729 54.5
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 5.2e-151 539.3 790 54.4
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 5.2e-151 539.3 804 48.8
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 8.9e-151 538.5 730 56.2
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 3.4e-150 536.6 783 46.2
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 5.8e-150 535.8 793 53.8
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 6.4e-149 532.3 740 54.2
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 1.9e-148 530.8 811 51.8
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 3.2e-148 530.0 737 55.2
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 5.0e-146 522.7 764 52.9
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 2.4e-135 487.3 731 52.0
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 7.6e-134 482.3 764 50.5
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 2.2e-133 480.7 804 43.0
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 6.6e-130 469.2 773 41.5
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 3.3e-121 440.3 570 61.6
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 8.1e-112 409.1 720 49.0
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 6.7e-98 362.8 562 49.1
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 2.4e-95 354.4 346 69.9
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 1.2e-86 325.5 524 56.1
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 2.0e-86 324.7 640 34.1
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 7.2e-76 289.7 789 41.7
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 6.7e-74 283.1 511 55.4
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 4.8e-72 276.9 401 62.3
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 1.7e-69 268.5 730 42.1
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.9e-68 265.0 812 40.0
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 6.1e-59 233.4 240 50.8
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 2.0e-57 228.4 220 59.5
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 1.1e-47 196.1 176 58.5
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 8.6e-45 186.4 524 34.0
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 2.1e-43 181.8 226 46.5
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 9.8e-41 172.9 309 50.8
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 3.7e-24 117.9 133 51.1
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 9.2e-23 113.2 173 41.0
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 4.9e-16 90.9 104 48.1
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.3e-13 82.8 74 58.1
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 3.4e-09 68.2 163 55.2
HPP92_019906 Vanilla planifolia HOM05D007063 ORTHO05D008822 7.8e-06 57.0 123 29.3


User provided reference genes

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