Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.5e-56 222.6 115 100.0
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.5e-35 152.1 113 69.9
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 8.4e-31 137.1 110 61.8
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.3e-28 129.8 108 63.0
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 3.0e-28 128.6 110 62.7
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 3.0e-28 128.6 104 56.7
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 7.4e-27 124.0 110 60.9
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 6.9e-25 117.5 116 57.8
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 9.0e-25 117.1 112 56.2
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 9.0e-25 117.1 110 58.2
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.5e-24 116.3 81 69.1
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 1.5e-24 116.3 79 63.3
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.0e-24 115.9 81 69.1
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.4e-24 115.2 71 74.6
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.4e-24 115.2 71 74.6
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 3.4e-24 115.2 71 71.8
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 4.5e-24 114.8 114 55.3
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 5.9e-24 114.4 71 73.2
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 5.9e-24 114.4 115 53.0
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 7.6e-24 114.0 100 59.0
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.0e-23 113.6 114 56.1
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.0e-23 113.6 71 71.8
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.3e-23 113.2 79 62.0
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.7e-23 112.8 65 78.5
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.9e-23 112.1 91 60.4
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 5.0e-23 111.3 114 54.4
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 6.5e-23 110.9 71 69.0
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 8.4e-23 110.5 117 53.0
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.1e-22 110.2 67 74.6
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 1.4e-22 109.8 72 73.6
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.4e-22 109.8 67 71.6
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 2.5e-22 109.0 121 52.1
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 3.2e-22 108.6 72 72.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 3.2e-22 108.6 70 68.6
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 4.2e-22 108.2 71 67.6
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 4.2e-22 108.2 81 63.0
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 7.2e-22 107.5 128 53.9
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 7.2e-22 107.5 71 70.4
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 9.3e-22 107.1 71 69.0
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 9.3e-22 107.1 71 69.0
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 9.3e-22 107.1 79 67.1
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.2e-21 106.7 114 51.8
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.6e-21 106.3 65 73.8
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.6e-21 106.3 65 73.8
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 1.6e-21 106.3 100 56.0
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 1.6e-21 106.3 114 53.5
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 2.1e-21 105.9 108 51.9
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.1e-21 105.9 112 52.7
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 2.1e-21 105.9 82 62.2
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.7e-21 105.5 109 50.5
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 2.7e-21 105.5 114 51.8
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 2.7e-21 105.5 80 61.2
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 2.7e-21 105.5 114 53.5
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 2.7e-21 105.5 113 51.3
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 3.5e-21 105.1 71 64.8
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.5e-21 105.1 113 52.2
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 4.6e-21 104.8 62 74.2
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 4.6e-21 104.8 73 65.8
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 4.6e-21 104.8 114 51.8
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 6.1e-21 104.4 65 69.2
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 6.1e-21 104.4 63 71.4
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 6.1e-21 104.4 112 50.0
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 7.9e-21 104.0 117 49.6
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 7.9e-21 104.0 112 52.7
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 1.0e-20 103.6 81 58.0
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.0e-20 103.6 81 58.0
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.3e-20 103.2 115 48.7
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.8e-20 102.8 113 50.4
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.8e-20 102.8 72 63.9
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 2.3e-20 102.4 114 47.4
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.0e-20 102.1 72 68.1
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.9e-20 101.7 113 50.4
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 3.9e-20 101.7 113 50.4
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 3.9e-20 101.7 64 68.8
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.9e-20 101.7 120 48.3
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 8.7e-20 100.5 72 65.3
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 8.7e-20 100.5 72 65.3
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 8.7e-20 100.5 122 45.1
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 8.7e-20 100.5 80 58.8
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 8.7e-20 100.5 71 63.4
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-19 100.1 72 63.9
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.1e-19 100.1 112 51.8
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.1e-19 100.1 72 63.9
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 1.5e-19 99.8 113 50.4
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.9e-19 99.4 71 62.0
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 1.9e-19 99.4 71 59.2
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.9e-19 99.4 71 60.6
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.9e-19 99.4 110 51.8
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 3.3e-19 98.6 72 62.5
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 3.3e-19 98.6 72 62.5
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 3.3e-19 98.6 72 62.5
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 3.3e-19 98.6 72 62.5
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 3.3e-19 98.6 72 62.5
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 3.3e-19 98.6 72 62.5
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.3e-19 98.6 114 50.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 3.3e-19 98.6 101 52.5
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 3.3e-19 98.6 70 65.7
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.3e-19 98.2 114 50.0
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 5.7e-19 97.8 112 50.0
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 5.7e-19 97.8 57 71.9
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 5.7e-19 97.8 88 55.7
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 7.4e-19 97.4 73 60.3
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 7.4e-19 97.4 65 67.7
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 9.7e-19 97.1 71 60.6
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 9.7e-19 97.1 72 61.1
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.3e-18 96.7 111 47.7
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.6e-18 96.3 56 73.2
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.2e-18 95.9 65 66.2
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 3.7e-18 95.1 72 59.7
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 4.8e-18 94.7 63 69.8
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 6.3e-18 94.4 99 50.5
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 6.3e-18 94.4 64 64.1
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 8.2e-18 94.0 112 45.5
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.8e-17 92.8 104 47.1
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.1e-17 91.7 63 63.5
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 4.1e-17 91.7 92 52.2
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.2e-16 90.1 63 58.7
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.5e-16 89.7 118 41.5
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 2.6e-16 89.0 114 43.9
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 5.9e-16 87.8 61 60.7
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 2.9e-15 85.5 49 75.5
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 3.8e-15 85.1 71 53.5
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 5.5e-14 81.3 73 52.1
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 5.5e-14 81.3 51 66.7
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 5.5e-14 81.3 104 43.3
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.4e-12 76.6 74 50.0
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 1.4e-12 76.6 71 56.3
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 3.9e-12 75.1 47 70.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 6.7e-12 74.3 45 68.9
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.5e-11 73.2 45 68.9
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 1.5e-11 73.2 45 68.9
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 2.5e-11 72.4 44 70.5
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 5.7e-11 71.2 53 58.5
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 9.7e-11 70.5 45 66.7
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.7e-10 69.7 46 63.0
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.3e-07 60.1 54 55.6
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 6.5e-07 57.8 32 75.0
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 8.5e-07 57.4 35 71.4
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.5e-06 55.8 32 71.9
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 5.5e-06 54.7 41 56.1
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 9.4e-06 53.9 32 71.9


User provided reference genes

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