Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 2.3e-111 405.6 205 100.0
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 2.2e-74 282.7 208 72.6
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 6.5e-66 254.6 206 67.0
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.8e-61 239.2 211 62.1
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.1e-60 237.3 207 63.3
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 5.0e-58 228.4 214 60.3
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 6.5e-58 228.0 219 59.4
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 2.5e-57 226.1 206 60.7
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 5.5e-57 224.9 223 58.7
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 4.3e-54 215.3 212 59.9
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 7.4e-54 214.5 214 57.5
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 3.1e-52 209.1 216 56.5
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 9.1e-52 207.6 223 57.8
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 5.9e-51 204.9 215 54.0
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.3e-50 203.8 218 54.1
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.2e-50 203.0 217 53.5
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.2e-50 203.0 218 53.7
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 2.9e-50 202.6 225 56.0
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 3.8e-50 202.2 217 56.7
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.5e-50 201.4 222 54.1
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 1.9e-49 199.9 217 53.0
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 1.9e-49 199.9 221 53.8
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.9e-49 199.9 218 53.7
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 2.5e-49 199.5 222 52.7
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 3.2e-49 199.1 225 53.3
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 4.2e-49 198.7 215 55.3
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.5e-49 198.4 219 55.7
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 5.5e-49 198.4 241 50.2
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 7.2e-49 198.0 225 55.6
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.6e-48 196.8 220 54.1
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.6e-48 196.8 225 56.0
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 3.6e-48 195.7 217 52.1
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 7.9e-48 194.5 218 54.1
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 1.0e-47 194.1 216 53.7
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 1.4e-47 193.7 216 56.0
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.4e-47 193.7 217 51.6
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.4e-47 193.7 221 53.8
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.3e-47 193.0 218 53.7
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 3.9e-47 192.2 216 52.8
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 5.1e-47 191.8 185 58.9
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.7e-47 191.4 207 53.1
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 8.8e-47 191.0 213 54.5
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.1e-46 190.7 217 53.5
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.5e-46 190.3 216 55.1
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.6e-46 189.5 225 54.7
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.3e-46 189.1 217 53.0
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 4.4e-46 188.7 217 52.5
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 4.4e-46 188.7 232 50.4
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.4e-46 188.0 213 54.5
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 2.2e-45 186.4 216 51.9
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.4e-44 183.7 226 53.1
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.1e-44 182.6 205 53.7
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 4.1e-44 182.2 209 55.5
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 5.3e-44 181.8 218 50.5
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.3e-44 181.8 206 53.9
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 6.9e-44 181.4 218 54.1
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 6.9e-44 181.4 211 55.5
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 9.1e-44 181.0 217 48.4
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.5e-43 180.3 205 53.7
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.5e-43 180.3 214 55.1
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 2.6e-43 179.5 216 51.4
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 3.4e-43 179.1 217 49.3
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 4.5e-43 178.7 211 53.1
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 5.9e-43 178.3 229 52.0
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 7.7e-43 177.9 229 51.5
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.7e-42 176.8 215 51.2
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 2.9e-42 176.0 226 52.2
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 1.1e-41 174.1 213 51.6
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.1e-41 174.1 221 50.7
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 1.4e-41 173.7 226 49.6
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.4e-41 173.7 211 49.8
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.4e-41 173.7 211 49.8
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.4e-41 173.7 216 47.2
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.2e-41 172.6 216 50.5
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.2e-41 172.2 214 51.4
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 9.4e-41 171.0 216 50.5
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.6e-40 170.2 215 48.8
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 2.1e-40 169.9 212 50.5
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.1e-40 169.9 223 49.8
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 2.7e-40 169.5 216 49.1
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 4.7e-40 168.7 209 51.2
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.7e-40 168.7 214 51.4
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.0e-39 167.5 218 48.2
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.8e-39 166.8 213 51.2
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.0e-39 166.0 216 50.9
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 5.2e-39 165.2 221 49.3
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 6.7e-39 164.9 212 50.9
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 8.8e-39 164.5 219 49.8
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 2.0e-38 163.3 215 49.3
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 2.6e-38 162.9 218 50.9
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 2.6e-38 162.9 226 48.7
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 4.4e-38 162.2 218 49.1
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 5.7e-38 161.8 168 54.2
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 5.7e-38 161.8 171 56.7
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.7e-38 161.0 219 48.9
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 3.7e-37 159.1 216 46.8
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 1.1e-36 157.5 217 47.0
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 1.1e-36 157.5 213 49.8
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 1.4e-36 157.1 176 52.3
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.4e-36 157.1 214 50.0
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.8e-36 156.8 213 46.9
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.4e-36 156.4 187 49.7
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 2.4e-36 156.4 217 45.6
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.1e-36 155.6 227 49.8
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 7.0e-36 154.8 218 45.0
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 7.0e-36 154.8 219 50.2
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 9.1e-36 154.5 210 47.1
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 9.1e-36 154.5 213 48.4
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.2e-35 154.1 219 47.5
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.6e-35 153.7 213 46.5
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.6e-35 153.7 215 47.0
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 2.0e-35 153.3 247 42.9
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.6e-35 152.9 225 48.9
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 2.6e-35 152.9 146 58.2
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 5.9e-35 151.8 213 45.5
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 5.9e-35 151.8 217 45.6
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 2.9e-34 149.4 210 48.6
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 8.5e-34 147.9 225 48.0
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.5e-33 147.1 218 43.6
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.9e-33 146.7 216 46.3
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 5.5e-33 145.2 197 49.2
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 7.2e-33 144.8 215 46.5
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 7.2e-33 144.8 230 43.0
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.6e-32 143.7 212 46.2
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.6e-32 143.7 208 47.1
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 3.6e-32 142.5 201 47.8
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 2.3e-31 139.8 194 47.9
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 8.8e-31 137.9 214 43.5
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 1.5e-30 137.1 203 44.8
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 3.3e-30 136.0 206 45.1
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 3.3e-30 136.0 206 45.1
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 5.7e-30 135.2 218 44.0
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 4.8e-29 132.1 214 44.9
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 4.8e-29 132.1 209 44.0
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 4.8e-29 132.1 222 44.1
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 1.1e-28 131.0 214 41.1
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 5.3e-28 128.6 206 43.2
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 1.2e-27 127.5 204 43.6
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 2.7e-27 126.3 89 71.9
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 4.5e-27 125.6 170 47.1
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 1.3e-26 124.0 171 46.2
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.7e-26 123.6 201 43.3
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 3.2e-25 119.4 219 44.3
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 7.2e-25 118.2 199 41.7
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 2.7e-24 116.3 189 44.4
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.4e-23 114.0 208 42.8
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 1.4e-20 104.0 206 36.4
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.8e-20 103.6 209 40.7
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 3.1e-20 102.8 126 51.6
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 9.1e-20 101.3 177 40.7
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 3.8e-18 95.9 216 38.4
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 5.0e-18 95.5 210 40.0
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.2e-16 90.9 87 57.5
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 1.6e-16 90.5 196 39.3
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 2.8e-16 89.7 196 39.3
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 4.7e-16 89.0 163 41.1
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.8e-15 87.0 214 38.3
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.5e-14 84.0 134 44.0
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 6.3e-13 78.6 83 54.2
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 7.8e-11 71.6 51 62.7
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.3e-10 70.9 154 35.7
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.3e-10 70.1 98 44.9
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 4.7e-08 62.4 96 46.9
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 6.8e-07 58.5 87 43.7


User provided reference genes

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