Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 8.1e-146 520.4 262 100.0
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.5e-107 393.3 230 86.1
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 2.5e-107 392.5 230 84.8
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 3.3e-107 392.1 230 84.3
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 1.4e-105 386.7 230 83.5
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.2e-104 383.6 230 81.7
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 5.8e-104 381.3 230 81.3
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.7e-103 379.8 229 82.1
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.1e-102 377.1 230 80.0
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.1e-102 377.1 230 81.3
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.6e-101 373.2 228 79.4
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.1e-101 372.9 230 79.1
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 5.1e-100 368.2 227 79.3
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 6.7e-100 367.9 230 78.7
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.9e-99 366.3 228 78.9
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.3e-99 365.2 230 79.1
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 7.4e-99 364.4 231 77.1
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 9.7e-99 364.0 227 78.0
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.6e-98 363.2 228 77.6
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 3.7e-98 362.1 230 77.8
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 6.3e-98 361.3 229 77.3
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 6.3e-98 361.3 228 77.2
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.1e-97 360.5 230 78.3
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.4e-97 360.1 227 78.0
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.8e-97 359.8 229 77.3
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.4e-97 359.4 227 78.0
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 3.1e-97 359.0 227 77.5
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 4.1e-97 358.6 228 78.1
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.1e-97 358.6 230 78.7
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 4.1e-97 358.6 227 78.0
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 5.3e-97 358.2 230 78.3
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 5.3e-97 358.2 227 78.4
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 2.0e-96 356.3 227 76.7
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 4.5e-96 355.1 227 76.7
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 5.9e-96 354.8 230 76.1
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 5.9e-96 354.8 229 76.4
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 5.9e-96 354.8 227 77.1
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.7e-96 354.4 258 70.5
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.2e-95 352.8 228 76.3
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 3.8e-95 352.1 229 75.5
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 3.8e-95 352.1 228 76.3
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 5.0e-95 351.7 228 76.3
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 6.5e-95 351.3 227 76.2
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 8.5e-95 350.9 230 73.5
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 8.5e-95 350.9 226 76.5
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 2.5e-94 349.4 227 74.0
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 4.2e-94 348.6 229 73.8
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 4.2e-94 348.6 228 73.7
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 5.5e-94 348.2 227 76.2
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.2e-93 347.1 227 74.4
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.6e-93 346.7 229 72.9
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.1e-93 346.3 227 75.3
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 3.6e-93 345.5 227 73.6
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 6.1e-93 344.7 227 74.9
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.0e-92 344.0 225 74.2
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 2.3e-92 342.8 228 72.4
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 3.0e-92 342.4 229 72.9
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.1e-92 341.7 228 75.0
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 5.1e-92 341.7 227 71.4
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 8.8e-92 340.9 226 74.8
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.1e-91 340.5 226 74.3
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.1e-91 340.5 264 64.8
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.5e-91 340.1 227 74.0
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 2.0e-91 339.7 227 72.7
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.0e-91 339.7 208 80.8
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.0e-91 339.7 228 70.6
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.5e-91 339.3 227 71.4
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 4.3e-91 338.6 227 72.7
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 9.7e-91 337.4 227 74.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.3e-90 337.0 227 73.6
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.3e-90 337.0 227 71.4
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-90 335.9 228 74.1
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 6.3e-90 334.7 227 73.6
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 8.2e-90 334.3 227 72.2
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.8e-89 333.2 218 75.7
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 3.1e-89 332.4 227 71.4
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.1e-89 332.4 227 71.4
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 4.1e-89 332.0 228 70.6
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 5.3e-89 331.6 229 71.2
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 6.9e-89 331.3 227 71.4
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 6.9e-89 331.3 228 71.5
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.2e-88 330.5 228 69.3
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.5e-88 330.1 224 74.1
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 2.0e-88 329.7 226 70.4
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.0e-88 329.7 228 69.3
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 2.0e-88 329.7 227 70.9
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.0e-88 329.7 228 69.3
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.6e-88 329.3 224 70.1
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 3.4e-88 328.9 228 70.2
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 4.5e-88 328.6 229 70.7
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 7.7e-88 327.8 226 71.7
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.7e-87 326.6 227 69.2
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 2.2e-87 326.2 229 71.2
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.8e-87 325.5 227 68.3
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 3.8e-87 325.5 227 68.7
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 3.8e-87 325.5 227 68.7
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 8.5e-87 324.3 227 68.3
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 8.5e-87 324.3 224 69.6
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.2e-86 322.4 226 71.2
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 4.2e-86 322.0 229 66.8
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.5e-86 321.6 202 77.7
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.6e-85 320.1 227 67.8
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.7e-85 319.3 226 67.7
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 6.1e-85 318.2 227 67.8
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 7.9e-85 317.8 227 67.0
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.0e-84 317.4 229 65.1
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.4e-84 317.0 227 67.4
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.8e-84 316.6 227 67.0
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.8e-84 316.6 226 67.3
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.3e-84 316.2 227 66.5
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 3.9e-84 315.5 227 67.0
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 6.7e-84 314.7 227 66.1
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.4e-81 306.2 309 52.8
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-80 303.9 227 67.8
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.6e-80 302.8 221 66.5
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 4.5e-80 302.0 209 68.9
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.7e-80 301.2 226 63.7
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-79 300.1 232 66.8
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 5.0e-79 298.5 195 76.9
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 7.2e-78 294.7 230 65.2
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 9.4e-78 294.3 204 69.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 9.4e-78 294.3 229 60.7
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.8e-76 290.0 188 73.9
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.3e-75 285.8 202 67.8
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 5.7e-75 285.0 229 61.1
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.7e-74 282.3 180 78.3
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 6.3e-74 281.6 224 64.3
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 5.9e-72 275.0 197 68.0
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 4.2e-70 268.9 182 76.4
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 7.7e-64 248.1 237 55.7
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.2e-63 246.5 224 54.0
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-61 240.0 147 78.9
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.8e-60 236.9 220 51.8
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.3e-58 230.7 234 51.7
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.7e-58 230.3 218 54.1
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.7e-56 223.0 215 55.3
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.7e-56 223.0 133 80.5
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.5e-56 222.6 144 75.0
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.7e-51 205.3 124 80.6
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 2.2e-50 203.4 173 60.7
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 5.9e-48 195.3 144 66.7
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 5.9e-48 195.3 142 71.8
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 6.6e-47 191.8 135 70.4
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 6.8e-44 181.8 140 58.6
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.7e-42 177.2 202 45.0
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-42 176.8 119 71.4
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 6.4e-42 175.3 134 63.4
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 8.3e-42 174.9 144 57.6
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 8.6e-39 164.9 146 58.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.8e-37 159.8 183 45.9
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 8.9e-36 154.8 126 63.5
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.0e-35 153.7 133 58.6
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.7e-34 150.6 97 78.4
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.4e-33 146.7 85 84.7
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 9.2e-33 144.8 191 44.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 2.1e-32 143.7 109 67.9
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.1e-32 143.7 88 80.7
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.0e-31 141.4 127 59.1
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 4.3e-30 136.0 102 68.6
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-28 130.6 108 60.2
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.8e-28 130.6 87 74.7
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.8e-28 130.6 119 55.5
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.5e-27 127.5 82 78.0
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.9e-26 122.5 85 68.2
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 8.3e-26 121.7 95 67.4
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 9.2e-25 118.2 99 62.6
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.6e-24 117.5 77 76.6
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.6e-24 117.5 74 75.7
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 3.5e-24 116.3 76 73.7
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 8.6e-23 111.7 117 51.3
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.3e-22 109.8 87 64.4
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-21 107.5 125 48.8
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 6.8e-20 102.1 61 78.7
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.1e-17 94.7 77 63.6
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 2.4e-17 93.6 51 86.3
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 4.2e-17 92.8 219 29.7
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 2.1e-16 90.5 187 30.5
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 6.0e-16 89.0 84 56.0
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.3e-14 83.2 70 58.6
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.4e-12 77.8 188 30.3
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-12 77.4 60 63.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 2.9e-10 70.1 67 55.2
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 7.1e-09 65.5 49 61.2


User provided reference genes

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