Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 5.4e-110 401.0 198 100.0
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 2.4e-86 322.4 198 77.3
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 3.2e-86 322.0 198 77.3
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 3.3e-83 312.0 198 73.7
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.6e-82 309.7 198 74.2
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.1e-82 309.3 236 65.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 3.6e-82 308.5 198 73.2
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.6e-82 308.5 234 66.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.8e-82 308.1 198 72.2
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 4.8e-82 308.1 234 65.8
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 8.1e-82 307.4 198 71.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 73.2
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 73.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 73.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.4e-81 306.6 198 71.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 72.7
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 3.1e-81 305.4 198 70.7
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.1e-81 305.4 198 73.2
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 72.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.5e-80 303.1 198 69.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 72.7
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 72.7
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.4e-80 301.6 198 69.2
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 69.7
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 69.7
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 9.9e-80 300.4 198 69.2
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 70.7
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.7
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 69.2
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 70.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 71.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 69.7
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 70.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 70.2
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 70.2
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 70.2
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 71.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 68.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.9e-78 296.2 199 70.4
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 71.2
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 68.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 5.4e-78 294.7 199 72.4
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 69.2
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 68.2
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 9.3e-78 293.9 200 72.0
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 68.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 68.2
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 66.2
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 69.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 68.2
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 67.2
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 67.2
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 66.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 68.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 67.2
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 68.2
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 67.7
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 68.2
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 3.0e-76 288.9 198 66.2
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 65.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 8.7e-76 287.3 200 66.5
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 70.2
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 66.7
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 65.7
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 66.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 68.2
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 66.7
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 66.7
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 66.7
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 66.2
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.5e-75 285.8 198 65.7
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 65.7
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 66.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-74 283.5 206 65.0
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-74 283.5 206 65.0
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.1e-74 282.7 198 66.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 2.8e-74 282.3 198 65.7
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 8.1e-74 280.8 170 75.3
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.1e-73 280.4 233 59.7
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 65.7
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.4e-73 280.0 216 61.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 65.7
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 4.0e-73 278.5 216 62.0
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.2e-72 276.9 198 65.7
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.2e-72 276.9 198 63.1
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.0e-72 276.2 198 67.2
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 2.6e-72 275.8 198 64.1
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 3.4e-72 275.4 241 58.5
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 4.5e-72 275.0 198 63.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 5.8e-72 274.6 176 71.0
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 7.6e-72 274.2 219 60.3
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 9.9e-72 273.9 198 62.1
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 2.2e-71 272.7 198 63.1
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 6.4e-71 271.2 198 63.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 6.4e-71 271.2 253 53.8
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 3.5e-69 265.4 173 69.4
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.5e-67 259.2 188 66.5
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.3e-67 258.5 198 60.1
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 5.6e-67 258.1 171 66.7
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.6e-66 256.5 170 68.2
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-64 250.4 180 63.9
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.0e-64 249.6 198 63.1
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 7.6e-64 247.7 198 59.6
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 8.4e-63 244.2 185 62.2
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.9e-62 243.0 191 60.2
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.7e-61 239.2 198 55.1
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 8.7e-60 234.2 167 67.1
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 4.3e-59 231.9 198 51.0
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 7.4e-59 231.1 160 67.5
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 8.2e-58 227.6 198 57.1
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 9.0e-57 224.2 198 50.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 4.2e-54 215.3 196 49.0
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 1.3e-52 210.3 145 67.6
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 3.7e-50 202.2 134 69.4
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 4.1e-49 198.7 197 45.7
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.2e-45 187.2 115 72.2
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 3.0e-44 182.6 160 50.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 8.8e-44 181.0 185 53.5
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.0e-43 179.9 154 53.2
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 7.4e-43 177.9 130 61.5
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.8e-42 176.0 120 65.0
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 3.7e-42 175.6 149 58.4
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.6e-40 169.5 130 61.5
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 6.5e-39 164.9 115 68.7
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 2.3e-36 156.4 143 50.3
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 3.9e-36 155.6 145 52.4
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.5e-35 153.7 111 65.8
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 2.4e-33 146.4 87 69.0
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.1e-33 146.0 115 55.7
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.3e-33 145.2 115 55.7
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 3.0e-28 129.4 77 83.1
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 3.0e-28 129.4 77 83.1
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 4.0e-28 129.0 81 77.8
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 1.5e-27 127.1 115 55.7
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 2.6e-27 126.3 143 41.3
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 4.8e-26 122.1 77 76.6
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 2.4e-25 119.8 77 74.0
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 3.1e-25 119.4 77 75.3
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.3e-23 114.0 77 70.1
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 8.5e-23 111.3 72 77.8
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.5e-22 110.5 77 70.1
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.9e-22 110.2 89 59.6
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.2e-22 109.4 77 67.5
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 9.4e-22 107.8 83 62.7
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 2.3e-20 103.2 69 71.0
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 1.2e-19 100.9 67 67.2
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 3.4e-19 99.4 60 70.0
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.3e-18 95.1 75 61.3
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 2.7e-16 89.7 145 40.0
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 3.5e-16 89.4 191 26.2
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.7e-15 87.0 55 67.3
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 1.7e-15 87.0 65 61.5
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 2.9e-15 86.3 100 40.0
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 1.2e-13 80.9 119 37.0
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 3.6e-13 79.3 76 50.0
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.0e-12 77.8 63 50.8
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 2.3e-12 76.6 60 55.0
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 1.2e-11 74.3 64 57.8
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-10 70.9 56 55.4
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.7e-10 70.5 53 60.4
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 8.3e-10 68.2 56 53.6
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 3.1e-09 66.2 45 71.1
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.9e-07 59.7 52 53.8
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 6.6e-07 58.5 56 51.8
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 1.5e-06 57.4 95 40.0


User provided reference genes

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