Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 1.1e-87 326.6 165 100.0
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 7.3e-28 127.9 169 49.7
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.6e-27 126.7 155 51.0
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 2.1e-27 126.3 164 50.6
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 4.8e-27 125.2 160 52.5
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 3.1e-26 122.5 169 47.9
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 5.3e-26 121.7 153 49.0
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.2e-25 120.6 167 49.7
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.2e-25 120.6 151 52.3
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.5e-25 120.2 146 53.4
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 2.0e-25 119.8 143 53.1
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 3.4e-25 119.0 155 49.0
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 5.8e-25 118.2 170 47.1
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 5.8e-25 118.2 149 53.7
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 9.9e-25 117.5 166 48.2
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 2.9e-24 115.9 160 50.6
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 8.4e-24 114.4 170 46.5
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.4e-23 113.6 154 48.7
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.4e-23 112.8 163 43.6
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 3.2e-23 112.5 162 46.3
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 7.1e-23 111.3 158 45.6
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 7.1e-23 111.3 152 50.0
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 7.1e-23 111.3 161 47.8
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 7.1e-23 111.3 156 46.2
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 9.3e-23 110.9 157 49.7
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.6e-22 110.2 158 45.6
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.6e-22 110.2 163 47.2
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.1e-22 109.8 148 49.3
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.1e-22 109.8 148 48.0
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.1e-22 109.8 148 48.0
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 3.5e-22 109.0 163 46.0
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.5e-22 109.0 161 46.0
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.5e-22 109.0 161 46.0
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 3.5e-22 109.0 175 42.3
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 4.6e-22 108.6 153 47.1
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.6e-22 108.6 161 46.0
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 4.6e-22 108.6 151 49.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 7.9e-22 107.8 138 47.8
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 7.9e-22 107.8 165 47.3
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.0e-21 107.5 166 44.6
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.8e-21 106.7 158 44.9
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 2.3e-21 106.3 178 43.3
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 2.3e-21 106.3 178 43.3
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 2.3e-21 106.3 159 45.9
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.3e-21 106.3 152 44.7
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 3.9e-21 105.5 174 42.5
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 5.1e-21 105.1 156 45.5
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 6.7e-21 104.8 153 45.8
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 6.7e-21 104.8 179 43.6
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 8.7e-21 104.4 156 47.4
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 8.7e-21 104.4 151 45.0
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 8.7e-21 104.4 135 49.6
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 1.1e-20 104.0 165 44.8
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.1e-20 104.0 164 43.9
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.1e-20 104.0 164 43.9
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.9e-20 103.2 177 45.2
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.9e-20 103.2 177 45.2
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 2.5e-20 102.8 163 44.2
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 3.3e-20 102.4 178 41.6
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 3.3e-20 102.4 160 45.6
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 5.6e-20 101.7 182 44.0
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 5.6e-20 101.7 152 45.4
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 7.4e-20 101.3 168 42.9
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 7.4e-20 101.3 160 43.8
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 9.6e-20 100.9 165 46.1
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.3e-19 100.5 155 46.5
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 2.1e-19 99.8 159 42.8
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 2.1e-19 99.8 159 42.8
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 2.1e-19 99.8 162 43.2
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.1e-19 99.8 157 46.5
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 3.6e-19 99.0 164 41.5
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.8e-19 98.6 157 44.6
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.8e-19 98.6 157 44.6
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 6.2e-19 98.2 141 45.4
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 8.1e-19 97.8 157 44.6
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.1e-18 97.4 156 45.5
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.8e-18 96.7 159 42.1
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.8e-18 96.7 162 44.4
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.8e-18 96.7 169 41.4
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.4e-18 96.3 151 45.0
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 3.1e-18 95.9 168 44.6
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 4.0e-18 95.5 150 46.7
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 5.3e-18 95.1 169 40.8
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 6.9e-18 94.7 186 39.2
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 6.9e-18 94.7 189 40.7
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.5e-17 93.6 161 41.6
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.5e-17 93.6 145 44.1
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.6e-17 92.8 150 44.7
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 3.4e-17 92.4 164 43.3
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.5e-17 92.0 169 39.1
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 4.5e-17 92.0 143 45.5
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 4.5e-17 92.0 166 39.8
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 5.8e-17 91.7 159 39.6
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 7.6e-17 91.3 157 43.3
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 9.9e-17 90.9 185 40.5
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.3e-16 90.5 161 41.0
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.2e-16 89.7 167 38.9
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.2e-16 89.7 161 40.4
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 2.9e-16 89.4 149 41.6
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 2.9e-16 89.4 149 41.6
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 3.8e-16 89.0 154 40.9
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 3.8e-16 89.0 154 40.9
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 3.8e-16 89.0 174 40.2
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 4.9e-16 88.6 163 39.9
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 6.4e-16 88.2 157 39.5
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 6.4e-16 88.2 154 40.3
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 6.4e-16 88.2 161 42.9
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.1e-15 87.4 156 38.5
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.4e-15 87.0 169 39.1
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.9e-15 86.7 165 38.8
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.9e-15 86.7 156 41.7
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 2.4e-15 86.3 149 43.0
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 4.2e-15 85.5 160 40.6
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 4.2e-15 85.5 96 52.1
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 9.3e-15 84.3 89 53.9
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 2.1e-14 83.2 169 39.1
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.7e-14 82.8 163 38.0
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 4.6e-14 82.0 182 40.7
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 7.9e-14 81.3 126 47.6
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.8e-13 80.1 152 40.1
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 3.9e-13 79.0 114 43.9
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 8.1e-11 71.2 141 41.8
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 8.1e-11 71.2 163 36.2
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-10 70.9 86 45.3
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.3e-10 68.6 50 70.0
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 7.6e-09 64.7 79 48.1
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.9e-08 62.8 96 46.9
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.9e-08 62.8 96 46.9
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.9e-08 62.8 96 46.9
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 4.9e-08 62.0 71 52.1
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 2.5e-07 59.7 158 32.9
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 3.2e-07 59.3 109 39.4
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 4.2e-07 58.9 84 48.8
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 4.2e-07 58.9 84 48.8
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 7.1e-07 58.2 85 45.9
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 1.6e-06 57.0 95 41.1
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 2.7e-06 56.2 87 43.7
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.5e-06 55.8 58 58.6
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 7.9e-06 54.7 118 38.1


User provided reference genes

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