Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.3e-60 235.3 118 100.0
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 6.8e-52 207.2 114 89.5
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 3.4e-51 204.9 115 86.1
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.7e-50 202.6 115 85.2
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 4.9e-50 201.1 114 86.0
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.9e-49 199.1 111 86.5
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 5.4e-49 197.6 116 82.8
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 7.0e-49 197.2 115 85.2
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 1.2e-48 196.4 115 83.5
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.2e-48 196.4 116 81.9
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.6e-48 196.1 116 81.9
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.6e-48 196.1 116 81.9
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 2.0e-48 195.7 115 82.6
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.7e-48 195.3 115 81.7
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 7.8e-48 193.7 115 81.7
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.0e-47 193.4 115 80.9
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 6.6e-47 190.7 115 80.0
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.6e-47 190.7 115 80.9
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 6.6e-47 190.7 115 82.6
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.2e-45 186.4 114 78.1
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.6e-45 186.0 113 78.8
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 2.1e-45 185.7 112 77.7
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 2.1e-45 185.7 113 78.8
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 4.7e-45 184.5 114 78.1
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.1e-44 183.3 111 76.6
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 2.3e-44 182.2 114 75.4
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 3.1e-44 181.8 111 77.5
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 3.1e-44 181.8 114 73.7
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 3.1e-44 181.8 114 73.7
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 3.1e-44 181.8 111 77.5
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 4.0e-44 181.4 111 76.6
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 4.0e-44 181.4 114 74.6
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 5.2e-44 181.0 109 77.1
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 5.2e-44 181.0 111 77.5
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 6.8e-44 180.6 111 76.6
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 8.9e-44 180.3 115 78.3
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.2e-43 179.9 111 78.4
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 74.8
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 76.6
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 2.0e-43 179.1 114 75.4
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 74.8
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.6e-43 178.7 111 78.4
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 2.6e-43 178.7 111 74.8
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 3.4e-43 178.3 111 74.8
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 4.4e-43 177.9 111 73.9
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 4.4e-43 177.9 115 74.8
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 5.8e-43 177.6 111 73.9
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 7.5e-43 177.2 115 73.9
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 9.8e-43 176.8 114 74.6
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 9.8e-43 176.8 111 75.7
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 75.7
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 77.5
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 73.0
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 74.8
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 3.7e-42 174.9 111 73.0
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 4.9e-42 174.5 110 72.7
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.4e-42 174.1 114 71.9
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 6.4e-42 174.1 115 73.9
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 6.4e-42 174.1 115 73.0
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 8.3e-42 173.7 111 72.1
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 8.3e-42 173.7 114 71.9
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 8.3e-42 173.7 114 71.9
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.4e-41 172.9 111 73.9
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.9e-41 172.6 111 73.0
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 2.4e-41 172.2 115 71.3
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.4e-41 172.2 114 71.1
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.4e-41 172.2 111 73.9
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.4e-41 172.2 111 73.9
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.4e-41 172.2 111 75.7
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 5.4e-41 171.0 111 73.0
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 7.1e-41 170.6 111 73.0
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 7.1e-41 170.6 111 73.0
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 7.1e-41 170.6 111 73.9
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 1.2e-40 169.9 111 73.0
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 1.2e-40 169.9 111 73.0
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.2e-40 169.9 111 72.1
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 1.6e-40 169.5 114 71.1
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 2.1e-40 169.1 111 72.1
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 2.1e-40 169.1 111 70.3
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 2.1e-40 169.1 111 71.2
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 2.7e-40 168.7 111 70.3
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 2.7e-40 168.7 111 70.3
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 4.6e-40 167.9 114 71.1
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 4.6e-40 167.9 111 71.2
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 6.0e-40 167.5 111 72.1
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 8.6e-39 163.7 115 67.8
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 1.1e-38 163.3 111 67.6
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 1.9e-38 162.5 111 68.5
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 1.9e-38 162.5 111 68.5
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 1.6e-37 159.5 111 70.3
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.6e-37 159.5 135 60.7
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 1.6e-37 159.5 113 68.1
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.1e-37 159.1 126 61.9
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 2.8e-37 158.7 108 69.4
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 6.2e-37 157.5 98 74.5
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 1.8e-36 156.0 108 67.6
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.3e-36 155.6 111 65.8
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 3.1e-36 155.2 132 58.3
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 6.8e-36 154.1 101 71.3
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 6.8e-36 154.1 111 64.9
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.6e-35 152.1 111 64.9
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 7.6e-35 150.6 106 67.0
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.9e-33 146.0 106 66.0
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.9e-33 146.0 110 64.5
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 3.2e-33 145.2 107 65.4
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 5.4e-33 144.4 103 68.0
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 2.1e-32 142.5 111 58.6
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 7.8e-32 140.6 81 77.8
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.1e-30 136.7 85 76.5
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.6e-29 132.9 132 53.8
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.7e-29 131.3 84 70.2
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 4.7e-29 131.3 109 56.9
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.8e-28 129.4 94 70.2
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 2.4e-28 129.0 74 83.8
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 5.2e-28 127.9 108 53.7
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.5e-27 126.3 87 69.0
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 2.9e-26 122.1 109 54.1
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.4e-25 119.8 177 43.5
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.7e-24 115.5 67 77.6
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 4.6e-24 114.8 75 70.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 4.6e-24 114.8 75 70.7
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 2.5e-22 109.0 72 68.1
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 4.3e-22 108.2 70 71.4
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.6e-21 105.1 74 66.2
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 4.8e-21 104.8 110 48.2
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 5.8e-19 97.8 135 37.0
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 5.8e-19 97.8 70 64.3
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 9.9e-19 97.1 82 58.5
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 4.2e-17 91.7 58 75.9
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 7.1e-17 90.9 57 71.9
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 2.1e-16 89.4 54 75.9
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 4.6e-16 88.2 54 77.8
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 5.3e-12 74.7 56 62.5
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 7.6e-11 70.9 48 68.8
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.4e-09 66.6 62 53.2
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.8e-07 59.7 48 56.2
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.1e-06 57.0 38 65.8


User provided reference genes

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