Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 1.1e-139 500.0 249 100.0
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 3.1e-86 322.4 283 64.3
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 5.4e-83 311.6 251 71.3
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 1.9e-80 303.1 189 77.2
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 1.1e-78 297.4 246 65.9
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 1.4e-75 287.0 186 77.4
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 1.0e-73 280.8 254 61.0
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 3.0e-73 279.3 188 75.5
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 6.6e-73 278.1 187 75.4
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 8.7e-73 277.7 186 75.3
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 1.9e-72 276.6 205 70.2
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 2.5e-72 276.2 197 73.1
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 3.3e-72 275.8 199 70.4
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 5.6e-72 275.0 231 64.1
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 7.3e-72 274.6 188 74.5
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 9.6e-72 274.2 186 72.6
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 9.6e-72 274.2 186 74.7
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 8.1e-71 271.2 189 72.5
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 3.1e-70 269.2 201 66.2
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 3.1e-70 269.2 188 73.9
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 5.2e-70 268.5 193 72.0
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 6.9e-70 268.1 184 72.8
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 6.9e-70 268.1 185 72.4
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 1.5e-69 266.9 185 73.0
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 2.0e-69 266.5 185 71.9
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 3.4e-69 265.8 203 67.0
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 5.8e-69 265.0 184 71.7
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 5.8e-69 265.0 184 70.7
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 5.8e-69 265.0 204 68.1
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 2.2e-68 263.1 185 71.4
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 2.2e-68 263.1 185 71.4
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 3.8e-68 262.3 185 71.9
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 4.9e-68 261.9 186 71.0
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 6.4e-68 261.5 213 65.3
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 6.4e-68 261.5 185 71.4
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 6.4e-68 261.5 185 70.8
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 1.1e-67 260.8 213 64.8
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 1.1e-67 260.8 216 63.9
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 3.2e-67 259.2 214 62.6
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 4.2e-67 258.8 184 70.7
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 9.3e-67 257.7 180 71.7
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 1.2e-66 257.3 214 62.1
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 1.2e-66 257.3 190 67.9
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 1.2e-66 257.3 186 69.4
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 1.6e-66 256.9 202 66.3
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 2.1e-66 256.5 187 69.0
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 2.1e-66 256.5 187 68.4
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 4.6e-66 255.4 187 70.6
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 7.8e-66 254.6 186 68.8
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 7.8e-66 254.6 187 70.6
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 3.9e-65 252.3 219 62.6
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 5.1e-65 251.9 191 68.6
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 6.6e-65 251.5 190 70.5
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 1.1e-64 250.8 210 65.2
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 1.1e-64 250.8 173 72.8
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 2.5e-64 249.6 186 69.9
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 2.5e-64 249.6 186 68.3
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 3.3e-64 249.2 172 70.3
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 3.3e-64 249.2 180 68.3
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.3e-64 249.2 180 68.3
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.3e-64 249.2 180 68.3
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.6e-63 246.9 180 67.8
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 3.6e-63 245.7 238 57.1
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 8.1e-63 244.6 174 73.0
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 1.8e-62 243.4 187 67.9
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.0e-62 242.3 180 67.2
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 1.2e-61 240.7 176 68.8
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 8.4e-60 234.6 190 64.7
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 8.4e-60 234.6 185 64.9
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 1.1e-59 234.2 154 73.4
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 9.3e-59 231.1 186 61.8
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 6.7e-57 224.9 177 63.8
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.5e-56 223.8 177 63.8
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 1.9e-56 223.4 190 60.5
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 7.4e-56 221.5 175 65.1
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 9.6e-56 221.1 177 63.3
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 6.2e-55 218.4 212 54.7
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 5.3e-54 215.3 185 60.5
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 5.3e-54 215.3 191 60.2
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 6.9e-54 214.9 192 58.3
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 3.4e-53 212.6 211 53.6
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 3.4e-53 212.6 206 56.3
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 3.4e-53 212.6 186 60.2
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 1.3e-52 210.7 186 60.2
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 3.8e-52 209.1 138 71.0
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 4.9e-52 208.8 207 56.5
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 1.1e-51 207.6 184 60.9
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 1.1e-51 207.6 184 60.9
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 7.1e-51 204.9 189 57.1
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 6.0e-50 201.8 185 60.0
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 2.8e-39 166.4 149 57.0
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 2.6e-37 159.8 99 72.7
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 3.4e-37 159.5 187 52.9
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 3.4e-37 159.5 99 72.7
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 1.1e-32 144.4 160 48.1
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 7.4e-32 141.7 191 42.4
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 8.2e-31 138.3 100 71.0
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 4.1e-30 136.0 111 68.5
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 1.6e-26 124.0 177 43.5
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 3.6e-26 122.9 116 63.8
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 7.0e-22 108.6 64 73.4
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 2.0e-21 107.1 63 76.2
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 7.2e-19 98.6 99 59.6
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 9.4e-19 98.2 98 53.1
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 1.2e-18 97.8 112 48.2
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 3.5e-13 79.7 69 63.8
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 4.2e-11 72.8 61 60.7
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.7e-10 70.1 60 61.7
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 4.7e-10 69.3 61 59.0
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.0e-09 68.2 76 56.6
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 3.7e-07 59.7 111 30.6
MCO03G440 Micromonas commoda HOM05D007115 ORTHO05D008923 3.1e-06 56.6 158 31.0


User provided reference genes

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