Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 1.2e-80 303.9 164 100.0
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 1.6e-69 266.9 163 85.3
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 1.8e-68 263.5 163 84.0
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 4.4e-67 258.8 163 81.6
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 7.5e-67 258.1 163 85.9
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 4.9e-66 255.4 162 85.8
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 4.9e-66 255.4 163 80.4
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 6.4e-66 255.0 163 83.4
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 6.4e-66 255.0 163 81.0
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 1.4e-65 253.8 162 84.0
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 3.2e-65 252.7 182 77.5
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 5.4e-65 251.9 163 82.8
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 7.1e-65 251.5 163 83.4
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.6e-64 250.4 163 81.6
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.6e-64 250.4 163 81.6
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 2.1e-64 250.0 163 82.8
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 2.7e-64 249.6 163 82.2
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 3.5e-64 249.2 160 83.8
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 4.6e-64 248.8 163 82.8
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 7.8e-64 248.1 166 81.9
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 2.3e-63 246.5 163 80.4
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 5.1e-63 245.4 158 81.6
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 5.1e-63 245.4 176 75.0
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 6.6e-63 245.0 163 80.4
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 2.5e-62 243.0 163 79.8
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 4.3e-62 242.3 163 80.4
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 7.3e-62 241.5 166 78.3
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 7.3e-62 241.5 163 79.1
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 9.5e-62 241.1 160 82.5
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 1.2e-61 240.7 163 79.8
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 1.2e-61 240.7 163 81.6
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 2.1e-61 240.0 163 79.8
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 2.1e-61 240.0 164 81.7
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.8e-61 239.6 163 78.5
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 3.6e-61 239.2 163 79.8
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.8e-60 236.9 160 78.8
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.8e-60 236.9 163 79.1
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 8.9e-60 234.6 163 79.1
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.5e-59 233.8 163 77.3
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 2.0e-59 233.4 163 77.3
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 2.6e-59 233.0 163 77.9
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 3.4e-59 232.6 165 77.6
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.4e-59 232.3 156 76.3
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 2.2e-58 229.9 163 76.1
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 6.4e-58 228.4 163 76.7
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 8.4e-58 228.0 149 83.9
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 1.4e-57 227.3 163 77.9
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 7.1e-57 224.9 163 77.3
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 9.2e-57 224.6 149 82.6
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 2.1e-56 223.4 163 76.7
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.7e-56 223.0 163 66.9
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 7.8e-56 221.5 163 71.8
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 1.3e-55 220.7 167 74.9
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 5.1e-55 218.8 163 74.8
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 6.6e-55 218.4 163 72.4
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 1.1e-54 217.6 163 76.7
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 1.5e-54 217.2 163 71.2
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 1.9e-54 216.9 148 79.7
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 9.6e-54 214.5 201 62.7
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 2.1e-53 213.4 163 71.8
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 2.8e-53 213.0 163 72.4
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 6.2e-53 211.8 168 73.2
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 1.1e-52 211.1 156 73.7
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.1e-52 211.1 147 81.0
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.4e-52 210.7 174 69.5
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.8e-52 210.3 149 77.2
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 2.4e-52 209.9 163 71.2
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 2.4e-52 209.9 163 71.2
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 6.9e-52 208.4 163 70.6
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 2.0e-51 206.8 154 73.4
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.0e-51 206.8 187 57.2
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 2.6e-51 206.5 163 70.6
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.4e-51 205.7 155 76.1
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 4.9e-50 202.2 163 69.3
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 4.9e-50 202.2 137 79.6
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 1.1e-49 201.1 156 71.2
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.9e-49 200.3 163 69.9
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 7.8e-48 194.9 163 68.7
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.7e-47 193.7 130 80.0
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 1.7e-47 193.7 130 83.1
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 8.7e-47 191.4 165 67.3
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 1.6e-45 187.2 163 66.3
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 2.1e-45 186.8 168 59.5
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.4e-44 184.1 140 76.4
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 5.3e-44 182.2 137 71.5
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 6.9e-44 181.8 104 81.7
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.2e-43 181.0 164 62.2
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 5.8e-43 178.7 188 59.6
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 7.6e-43 178.3 128 74.2
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 1.7e-42 177.2 104 76.9
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 2.9e-42 176.4 156 55.1
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 8.4e-42 174.9 152 67.8
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 1.4e-41 174.1 143 67.8
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.4e-41 173.3 164 54.9
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 3.2e-41 172.9 215 44.2
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.1e-40 170.2 128 73.4
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.7e-40 169.9 163 61.3
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 6.2e-37 158.7 163 52.8
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 1.1e-36 157.9 91 82.4
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 6.9e-36 155.2 106 67.9
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 9.0e-36 154.8 165 55.8
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 2.0e-35 153.7 151 55.6
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.4e-35 152.9 158 58.9
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.5e-35 152.5 145 60.0
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 4.5e-35 152.5 145 64.1
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 5.8e-35 152.1 163 56.4
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 2.9e-34 149.8 168 60.7
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 6.5e-34 148.7 150 58.0
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.9e-33 147.1 153 58.8
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 4.2e-33 146.0 132 68.2
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.6e-32 144.1 135 65.9
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 1.6e-32 144.1 104 68.3
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 2.7e-32 143.3 104 66.3
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.8e-31 140.6 104 64.4
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 5.1e-31 139.0 106 63.2
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 1.9e-30 137.1 143 50.3
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 4.3e-30 136.0 109 64.2
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 7.4e-30 135.2 108 64.8
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-29 134.0 112 60.7
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.1e-29 133.7 163 45.4
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 2.8e-29 133.3 148 53.4
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 4.8e-29 132.5 133 62.4
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 4.8e-29 132.5 157 55.4
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.1e-28 131.3 103 57.3
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 3.1e-28 129.8 137 59.9
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 6.9e-28 128.6 144 58.3
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 4.2e-25 119.4 135 60.0
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 5.5e-25 119.0 129 56.6
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 1.3e-23 114.4 133 57.1
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 3.0e-23 113.2 104 56.7
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 3.3e-22 109.8 134 56.0
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.2e-21 105.1 129 46.5
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.2e-21 105.1 131 46.6
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.4e-20 103.6 127 47.2
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.1e-20 102.8 101 56.4
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 1.2e-19 101.3 127 45.7
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.6e-19 100.1 100 56.0
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 3.4e-19 99.8 64 73.4
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.7e-18 97.4 64 71.9
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.2e-18 97.1 59 76.3
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.2e-18 97.1 59 66.1
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-16 91.3 73 61.6
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.7e-16 90.1 152 37.5
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.8e-15 87.4 163 40.5
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 3.9e-15 86.3 118 44.9
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.9e-15 86.3 118 44.9
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.1e-14 84.7 176 36.4
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 5.7e-14 82.4 151 47.7
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 2.8e-13 80.1 52 71.2
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 4.8e-13 79.3 112 43.8
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 1.1e-12 78.2 52 69.2
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.8e-12 77.4 59 57.6
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 3.1e-12 76.6 52 67.3
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.1e-12 76.3 63 50.8
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 4.1e-12 76.3 53 64.2
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.3e-12 75.9 43 81.4
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.1e-12 75.1 155 40.6
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-11 74.7 100 41.0
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-11 74.7 73 47.9
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 3.8e-10 69.7 56 57.1
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.5e-09 65.9 59 52.5
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-08 64.3 81 48.1
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.1e-06 58.2 60 48.3


User provided reference genes

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