Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C035685.2 Cucumis melo HOM05D008649 ORTHO05D004881 1.8e-128 462.6 232 100.0
LjContig00049g0001527 Lotus japonicus HOM05D000104 ORTHO05D004881 6.7e-11 72.0 70 62.9
Psat2g019640 Pisum sativum HOM05D000104 ORTHO05D004881 2.0e-10 70.5 69 62.3
Atru.chr3.2807 Acer truncatum HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
arahy.Tifrunner.gnm1.ann1.F2KJX5 Arachis hypogaea HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
arahy.Tifrunner.gnm1.ann1.Q1C604 Arachis hypogaea HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Cpa.g.c37405 Carica papaya HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Cfa009834 Carpinus fangiana HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
CiPaw.13G152700 Carya illinoinensis HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
COL.COLO4_07230 Corchorus olitorius HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Haze_23201 Corylus avellana HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Eucgr.L03337 Eucalyptus grandis HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Glyma.02G281000 Glycine max HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Glyma.14G033600 Glycine max HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Lalb_Chr04g0249101 Lupinus albus HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Lalb_Chr10g0106381 Lupinus albus HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Manes.01G181800 Manihot esculenta HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Potri.009G047800 Populus trichocarpa HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
PGR119G1457 Punica granatum HOM05D000104 ORTHO05D004881 2.6e-10 70.1 70 61.4
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 2.6e-10 70.1 70 61.4
Ciclev10014019m.g Citrus clementina HOM05D000104 ORTHO05D004881 3.3e-10 69.7 70 60.0
DCAR_002093 Daucus carota HOM05D000104 ORTHO05D004881 3.3e-10 69.7 70 60.0
Dinv08770 Davidia involucrata HOM05D000104 ORTHO05D004881 3.3e-10 69.7 70 61.4
HanXRQChr12g0357371 Helianthus annuus HOM05D000104 ORTHO05D004881 3.3e-10 69.7 70 60.0
Peaxi162Scf00062g00086 Petunia axillaris HOM05D000104 ORTHO05D004881 3.3e-10 69.7 70 61.4
TWI75G1602 Tripterygium wilfordii HOM05D000104 ORTHO05D004881 3.3e-10 69.7 70 60.0
GSVIVG01037235001 Vitis vinifera HOM05D000104 ORTHO05D004881 3.3e-10 69.7 70 61.4
CDE08G1000 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 4.4e-10 69.3 234 30.3
Ca_06225_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004881 4.4e-10 69.3 66 63.6
ClCG02G022980 Citrullus lanatus HOM05D000104 ORTHO05D004881 4.4e-10 69.3 64 67.2
MELO3C014569.2 Cucumis melo HOM05D000104 ORTHO05D004881 4.4e-10 69.3 64 67.2
CsaV3_6G039100 Cucumis sativus L. HOM05D000104 ORTHO05D004881 4.4e-10 69.3 64 67.2
Medtr5g090090 Medicago truncatula HOM05D000104 ORTHO05D004881 4.4e-10 69.3 66 63.6
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 4.4e-10 69.3 70 61.4
TPR.G26010 Trifolium pratense HOM05D000104 ORTHO05D004881 4.4e-10 69.3 66 63.6
Actinidia06945 Actinidia chinensis HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Actinidia16360 Actinidia chinensis HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
AL3G45270 Arabidopsis lyrata HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
AT2G13370 Arabidopsis thaliana HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
BcaB02g11515 Brassica carinata HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
BcaC04g23082 Brassica carinata HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
A09p10390 Brassica napus HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
C09p12330 Brassica napus HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
BolC9t54126H Brassica oleracea HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
BraA09t36683Z Brassica rapa HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
Carub.0003s2790 Capsella rubella HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
CARHR105150 Cardamine hirsuta HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
AUR62039837 Chenopodium quinoa HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Cc01_g05810 Coffea canephora HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Dinv36192 Davidia involucrata HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
FvH4_3g28110 Fragaria vesca HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
FAN11G2466 Fragaria x ananassa HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
FAN16G2830 Fragaria x ananassa HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
FAN21G2988 Fragaria x ananassa HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
FAN25G0427 Fragaria x ananassa HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Gohir.A13G217600 Gossypium hirsutum HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Gohir.D13G221200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Gorai.013G252300 Gossypium raimondii HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
MD03G1168800 Malus domestica HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
MD11G1194800 Malus domestica HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Manes.02G141700 Manihot esculenta HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 60.0
Potri.001G253400 Populus trichocarpa HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Prupe.4G258700 Prunus persica HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Rhsim13G0216000 Rhododendron simsii HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
RcHm_v2.0_Chr5g0050791 Rosa chinensis HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 5.7e-10 68.9 70 61.4
Thecc.09G243900 Theobroma cacao HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
vmacro04008 Vaccinium macrocarpon HOM05D000104 ORTHO05D004881 5.7e-10 68.9 70 61.4
ECA233G4577 Erigeron canadensis HOM05D000104 ORTHO05D004881 7.4e-10 68.6 70 60.0
Migut.N02364 Erythranthe guttata HOM05D000104 ORTHO05D004881 7.4e-10 68.6 70 60.0
Gohir.D09G107800 Gossypium hirsutum HOM05D000104 ORTHO05D004881 7.4e-10 68.6 67 61.2
Gorai.006G125500 Gossypium raimondii HOM05D000104 ORTHO05D004881 7.4e-10 68.6 67 61.2
Lsat_1_v5_gn_2_38240 Lactuca sativa HOM05D000104 ORTHO05D004881 7.4e-10 68.6 70 60.0
Lsat_1_v5_gn_4_146300 Lactuca sativa HOM05D000104 ORTHO05D004881 7.4e-10 68.6 70 60.0
Pp3c5_19940 Physcomitrium patens HOM05D000104 ORTHO05D004881 7.4e-10 68.6 80 52.5
Psat5g195080 Pisum sativum HOM05D000104 ORTHO05D004881 7.4e-10 68.6 70 58.6
QL01p017715 Quercus lobata HOM05D000104 ORTHO05D004881 7.4e-10 68.6 70 60.0
CSS0005534 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 9.7e-10 68.2 64 65.6
CSS0013867 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 9.7e-10 68.2 64 65.6
Thhalv10022519m.g Eutrema salsugineum HOM05D000104 ORTHO05D004881 9.7e-10 68.2 70 60.0
Gohir.A09G111200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 9.7e-10 68.2 66 62.1
Pp3c6_10390 Physcomitrium patens HOM05D000104 ORTHO05D004881 9.7e-10 68.2 80 51.2
Sp3g26880 Schrenkiella parvula HOM05D000104 ORTHO05D004881 9.7e-10 68.2 67 61.2
Hund07450 Selenicereus undatus HOM05D000104 ORTHO05D004881 9.7e-10 68.2 70 60.0
Aa31sc426G10 Aethionema arabicum HOM05D000104 ORTHO05D004881 1.3e-09 67.8 70 60.0
CANSAT54G1548 Cannabis sativa HOM05D000104 ORTHO05D004881 1.3e-09 67.8 70 60.0
HanXRQChr14g0433041 Helianthus annuus HOM05D000104 ORTHO05D004881 1.3e-09 67.8 64 64.1
Medtr3g053910 Medicago truncatula HOM05D000104 ORTHO05D004881 1.3e-09 67.8 70 58.6
Phvul.008G199800 Phaseolus vulgaris HOM05D000104 ORTHO05D004881 1.3e-09 67.8 70 60.0
SEGI_37148 Sequoiadendron giganteum HOM05D000104 ORTHO05D004881 1.3e-09 67.8 70 60.0
THA.LOC104826485 Tarenaya hassleriana HOM05D000104 ORTHO05D004881 1.3e-09 67.8 70 60.0
VMungo0647G0770 Vigna mungo HOM05D000104 ORTHO05D004881 1.3e-09 67.8 70 60.0
MELO3C033241.2 Cucumis melo HOM05D008649 ORTHO05D169227 1.7e-09 67.4 99 47.5
Lj1C304T4 Lonicera japonica HOM05D000104 ORTHO05D004881 1.7e-09 67.4 70 58.6
Nitab4.5_0001925g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004881 1.7e-09 67.4 70 60.0
Sed0002979 Sechium edule HOM05D000104 ORTHO05D004881 1.7e-09 67.4 70 60.0
Solyc12g099910.2 Solanum lycopersicum HOM05D000104 ORTHO05D004881 1.7e-09 67.4 70 60.0
Sopen12g034530 Solanum pennellii HOM05D000104 ORTHO05D004881 1.7e-09 67.4 70 60.0
SGA_v2.0_scaffold3G01470 Striga asiatica HOM05D000104 ORTHO05D004881 1.7e-09 67.4 70 60.0
Ah.06g194420 Amaranthus hybridus HOM05D000104 ORTHO05D004881 2.2e-09 67.0 70 60.0
Aqoxy2G00308 Aquilegia oxysepala HOM05D000104 ORTHO05D004881 2.2e-09 67.0 70 60.0
Nitab4.5_0011766g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004881 2.2e-09 67.0 70 58.6
Sc09g0000930 Simmondsia chinensis HOM05D000104 ORTHO05D004881 2.2e-09 67.0 70 58.6
EL10Ac4g10173 Beta vulgaris HOM05D000104 ORTHO05D004881 2.8e-09 66.6 70 58.6
MBI13_g29528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 2.8e-09 66.6 66 63.6
Mapoly0005s0060 Marchantia polymorpha HOM05D000104 ORTHO05D004881 2.8e-09 66.6 54 68.5
TAR636G3192 Trochodendron aralioides HOM05D000104 ORTHO05D004881 2.8e-09 66.6 70 60.0
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 4.8e-09 65.9 70 60.0
MBI13_g08642_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 4.8e-09 65.9 84 50.0
HPP92_006715 Vanilla planifolia HOM05D000104 ORTHO05D004881 4.8e-09 65.9 64 64.1
HPP92_006720 Vanilla planifolia HOM05D000104 ORTHO05D004881 4.8e-09 65.9 64 64.1
Lj1C295T5 Lonicera japonica HOM05D000104 ORTHO05D004881 6.3e-09 65.5 64 62.5
PSO339G0098 Papaver somniferum HOM05D000104 ORTHO05D004881 6.3e-09 65.5 70 58.6
PSO384G4411 Papaver somniferum HOM05D000104 ORTHO05D004881 6.3e-09 65.5 70 58.6
CDE09G0540 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 8.2e-09 65.1 70 58.6
Nn7g36507 Nelumbo nucifera HOM05D000104 ORTHO05D004881 1.1e-08 64.7 80 50.0
ATR0721G152 Amborella trichopoda HOM05D000104 ORTHO05D004881 1.4e-08 64.3 70 57.1
CAN.G484.5 Capsicum annuum HOM05D000104 ORTHO05D004881 1.8e-08 63.9 37 83.8
Oeu009927.1 Olea europaea HOM05D000104 ORTHO05D004881 1.8e-08 63.9 37 83.8
Psat4g095400 Pisum sativum HOM05D000104 ORTHO05D004881 1.8e-08 63.9 37 83.8
SMO117G0029 Selaginella moellendorffii HOM05D000104 ORTHO05D004881 1.8e-08 63.9 67 58.2
unitig_699.g19140 Utricularia gibba HOM05D000104 ORTHO05D004881 1.8e-08 63.9 70 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3208 Anthoceros agrestis HOM05D000104 ORTHO05D004881 2.4e-08 63.5 55 63.6
Psat2g019600 Pisum sativum HOM05D000104 ORTHO05D004881 4.1e-08 62.8 37 81.1
PGSC0003DMG400004650 Solanum tuberosum HOM05D000104 ORTHO05D004881 1.5e-07 60.8 34 85.3
Cpa.g.c36207 Carica papaya HOM05D000104 ORTHO05D004881 2.0e-07 60.5 37 78.4
Os07g0660200 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004881 2.0e-07 60.5 37 78.4
Cre03.g179300 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D004881 5.9e-07 58.9 37 75.7
Psat2g047240 Pisum sativum HOM05D000104 ORTHO05D004881 2.2e-06 57.0 36 75.0
ClCG06G010510 Citrullus lanatus HOM05D000836 ORTHO05D000709 6.5e-06 55.5 28 89.3


User provided reference genes

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