Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032915.2 Cucumis melo HOM05D000860 ORTHO05D006064 9.0e-23 109.4 55 100.0
MELO3C029958.2 Cucumis melo HOM05D000860 ORTHO05D006064 5.8e-22 106.7 54 94.4
MELO3C008658.2 Cucumis melo HOM05D000860 ORTHO05D006064 1.7e-21 105.1 54 94.4
CsaV3_7G003950 Cucumis sativus L. HOM05D000860 ORTHO05D006064 2.2e-21 104.8 54 92.6
MELO3C000084.2 Cucumis melo HOM05D000860 ORTHO05D006064 3.8e-21 104.0 54 94.4
MELO3C027253.2 Cucumis melo HOM05D000860 ORTHO05D006064 1.2e-19 99.0 55 89.1
MELO3C025410.2 Cucumis melo HOM05D000860 ORTHO05D006064 1.6e-19 98.6 54 88.9
ClCG02G001460 Citrullus lanatus HOM05D000860 ORTHO05D006064 4.6e-19 97.1 54 85.2
MELO3C000317.2 Cucumis melo HOM05D000860 ORTHO05D006064 3.0e-18 94.4 47 93.6
MELO3C027700.2 Cucumis melo HOM05D000860 ORTHO05D006064 5.3e-15 83.6 42 90.5
Sed0003367 Sechium edule HOM05D000860 ORTHO05D006064 6.9e-15 83.2 54 70.4
FAN05G0414 Fragaria x ananassa HOM05D000860 ORTHO05D006064 1.2e-14 82.4 54 68.5
RcHm_v2.0_Chr2g0160701 Rosa chinensis HOM05D000860 ORTHO05D006064 1.2e-14 82.4 54 68.5
Cfa014481 Carpinus fangiana HOM05D000860 ORTHO05D006064 3.4e-14 80.9 54 66.7
MD09G1127700 Malus domestica HOM05D000860 ORTHO05D006064 4.5e-14 80.5 54 64.8
Haze_12996 Corylus avellana HOM05D000860 ORTHO05D006064 7.6e-14 79.7 54 64.8
Prupe.3G223700 Prunus persica HOM05D000860 ORTHO05D006064 1.7e-13 78.6 54 64.8
Cpa.g.sc34.49 Carica papaya HOM05D000860 ORTHO05D006064 2.2e-13 78.2 54 64.8
CANSAT64G2191 Cannabis sativa HOM05D000860 ORTHO05D006064 3.8e-13 77.4 54 64.8
Manes.12G078700 Manihot esculenta HOM05D000860 ORTHO05D006064 6.5e-13 76.6 53 67.9
FAN09G3393 Fragaria x ananassa HOM05D000860 ORTHO05D006064 1.1e-12 75.9 54 66.7
Eucgr.A01742 Eucalyptus grandis HOM05D000860 ORTHO05D006064 4.2e-12 73.9 54 64.8
QL01p000412 Quercus lobata HOM05D000860 ORTHO05D006064 9.3e-12 72.8 54 59.3
Potri.019G125300 Populus trichocarpa HOM05D000860 ORTHO05D006064 3.5e-11 70.9 54 61.1
TPR.G19038 Trifolium pratense HOM05D000860 ORTHO05D006064 4.6e-11 70.5 54 59.3
CiPaw.04G120200 Carya illinoinensis HOM05D000860 ORTHO05D006064 6.1e-11 70.1 54 61.1
Sabra13G0122200 Salix brachista HOM05D000860 ORTHO05D006064 6.1e-11 70.1 54 61.1
Atru.chr6.3106 Acer truncatum HOM05D000860 ORTHO05D006064 7.9e-11 69.7 54 57.4
Gohir.D05G244866 Gossypium hirsutum HOM05D000860 ORTHO05D006064 1.0e-10 69.3 54 57.4
Gorai.009G254500 Gossypium raimondii HOM05D000860 ORTHO05D006064 1.0e-10 69.3 54 57.4
Psat7g163240 Pisum sativum HOM05D000860 ORTHO05D006064 1.0e-10 69.3 54 57.4
PGR042G0516 Punica granatum HOM05D000860 ORTHO05D006064 1.3e-10 68.9 54 59.3
TAR627G1143 Trochodendron aralioides HOM05D000860 ORTHO05D006064 1.3e-10 68.9 54 55.6
VMungo1127G0801 Vigna mungo HOM05D000860 ORTHO05D006064 1.3e-10 68.9 54 55.6
Thecc.08G153000 Theobroma cacao HOM05D000860 ORTHO05D006064 1.8e-10 68.6 54 57.4
Lj8E120T0 Lonicera japonica HOM05D000860 ORTHO05D006064 5.1e-10 67.0 54 57.4
Duzib116G0686 Durio zibethinus HOM05D000860 ORTHO05D006064 8.7e-10 66.2 54 53.7
Aqoxy1G03983 Aquilegia oxysepala HOM05D000860 ORTHO05D006064 1.1e-09 65.9 54 55.6
Cc05_g05560 Coffea canephora HOM05D000860 ORTHO05D006064 1.9e-09 65.1 54 57.4
Migut.H01212 Erythranthe guttata HOM05D000860 ORTHO05D006064 1.9e-09 65.1 53 60.4
Hma1.2p1_0712F.1_g207590 Hydrangea macrophylla HOM05D000860 ORTHO05D006064 1.9e-09 65.1 55 58.2
Potri.013G152100 Populus trichocarpa HOM05D000860 ORTHO05D006064 1.9e-09 65.1 54 57.4
Phvul.011G108000 Phaseolus vulgaris HOM05D000860 ORTHO05D006064 2.5e-09 64.7 54 51.9
Ciclev10016548m.g Citrus clementina HOM05D000860 ORTHO05D006064 3.3e-09 64.3 54 51.9
COL.COLO4_08562 Corchorus olitorius HOM05D000860 ORTHO05D006064 3.3e-09 64.3 54 53.7
Oeu040640.1 Olea europaea HOM05D000860 ORTHO05D006064 3.3e-09 64.3 54 53.7
Lj3g0007411 Lotus japonicus HOM05D000860 ORTHO05D006064 4.3e-09 63.9 54 53.7
MELO3C029864.2 Cucumis melo HOM05D000860 ORTHO05D006064 5.7e-09 63.5 32 87.5
Nitab4.5_0000036g0430 Nicotiana tabacum HOM05D000860 ORTHO05D006064 5.7e-09 63.5 54 57.4
Aa31LG5G12200 Aethionema arabicum HOM05D000860 ORTHO05D006064 7.4e-09 63.2 51 54.9
MSTRG.12291 Avicennia marina HOM05D000860 ORTHO05D006064 7.4e-09 63.2 54 55.6
Medtr4g046723 Medicago truncatula HOM05D000860 ORTHO05D006064 7.4e-09 63.2 54 55.6
Glyma.12G103300 Glycine max HOM05D000860 ORTHO05D006064 9.7e-09 62.8 54 48.1
Gohir.A05G243700 Gossypium hirsutum HOM05D000860 ORTHO05D006064 9.7e-09 62.8 54 53.7
FAN05G2158 Fragaria x ananassa HOM05D000860 ORTHO05D006064 1.3e-08 62.4 41 68.3
BcaC06g32732 Brassica carinata HOM05D000860 ORTHO05D006064 1.6e-08 62.0 54 51.9
DCAR_009702 Daucus carota HOM05D000860 ORTHO05D006064 2.2e-08 61.6 54 57.4
SGA_v2.0_scaffold5G02801 Striga asiatica HOM05D000860 ORTHO05D006064 2.2e-08 61.6 54 55.6
A03p56870 Brassica napus HOM05D000860 ORTHO05D006064 2.8e-08 61.2 54 53.7
BraA03t14755Z Brassica rapa HOM05D000860 ORTHO05D006064 2.8e-08 61.2 54 53.7
C07p55200 Brassica napus HOM05D000860 ORTHO05D006064 3.7e-08 60.8 54 51.9
BolC7t45993H Brassica oleracea HOM05D000860 ORTHO05D006064 3.7e-08 60.8 54 50.0
Nitab4.5_0007512g0030 Nicotiana tabacum HOM05D000860 ORTHO05D006064 3.7e-08 60.8 54 51.9
EL10Ac4g09314 Beta vulgaris HOM05D000860 ORTHO05D006064 4.8e-08 60.5 54 48.1
Actinidia27025 Actinidia chinensis HOM05D000860 ORTHO05D006064 8.2e-08 59.7 45 60.0
PGSC0003DMG400010404 Solanum tuberosum HOM05D000860 ORTHO05D006064 8.2e-08 59.7 54 51.9
Peaxi162Scf00703g00019 Petunia axillaris HOM05D000860 ORTHO05D006064 1.1e-07 59.3 54 50.0
Solyc02g063460.1 Solanum lycopersicum HOM05D000860 ORTHO05D006064 1.1e-07 59.3 54 51.9
Sopen02g014550 Solanum pennellii HOM05D000860 ORTHO05D006064 1.1e-07 59.3 54 51.9
Medtr4g063440 Medicago truncatula HOM05D000860 ORTHO05D006064 1.8e-07 58.5 43 60.5
BcaNung00758 Brassica carinata HOM05D000860 ORTHO05D006064 2.4e-07 58.2 54 51.9
C01p02820 Brassica napus HOM05D000860 ORTHO05D006064 2.4e-07 58.2 54 51.9
C01p02850 Brassica napus HOM05D000860 ORTHO05D006064 2.4e-07 58.2 54 51.9
CAN.G1061.28 Capsicum annuum HOM05D000860 ORTHO05D006064 2.4e-07 58.2 54 50.0
TWI75G0472 Tripterygium wilfordii HOM05D000860 ORTHO05D006064 2.4e-07 58.2 54 55.6
AL7G26100 Arabidopsis lyrata HOM05D000860 ORTHO05D006064 4.1e-07 57.4 54 51.9
PSO017G4595 Papaver somniferum HOM05D000860 ORTHO05D006064 4.1e-07 57.4 54 48.1
AUR62000872 Chenopodium quinoa HOM05D000860 ORTHO05D006064 6.9e-07 56.6 54 48.1
BolC1t00273H Brassica oleracea HOM05D000860 ORTHO05D006064 9.0e-07 56.2 54 48.1
AUR62005104 Chenopodium quinoa HOM05D000860 ORTHO05D006064 9.0e-07 56.2 54 48.1
Sp7g24690 Schrenkiella parvula HOM05D000860 ORTHO05D006064 9.0e-07 56.2 54 50.0
Carub.0007s1411 Capsella rubella HOM05D000860 ORTHO05D006064 1.2e-06 55.8 54 50.0
CARHR234350 Cardamine hirsuta HOM05D000860 ORTHO05D006064 1.5e-06 55.5 54 50.0
Thhalv10027187m.g Eutrema salsugineum HOM05D000860 ORTHO05D006064 2.0e-06 55.1 54 48.1
AT2G16030 Arabidopsis thaliana HOM05D000860 ORTHO05D006064 2.6e-06 54.7 54 50.0
HanXRQChr12g0361971 Helianthus annuus HOM05D000860 ORTHO05D006064 3.4e-06 54.3 54 48.1
Solyc02g091600.1 Solanum lycopersicum HOM05D000860 ORTHO05D006064 3.4e-06 54.3 54 46.3
Sopen02g036220 Solanum pennellii HOM05D000860 ORTHO05D006064 3.4e-06 54.3 54 46.3
PGSC0003DMG400030659 Solanum tuberosum HOM05D000860 ORTHO05D006064 3.4e-06 54.3 54 46.3
Gorai.003G146300 Gossypium raimondii HOM05D000860 ORTHO05D006064 5.9e-06 53.5 54 51.9
A07p04720 Brassica napus HOM05D000860 ORTHO05D006064 7.7e-06 53.1 54 48.1
BraA07t28260Z Brassica rapa HOM05D000860 ORTHO05D006064 7.7e-06 53.1 54 48.1
Gohir.D03G139600 Gossypium hirsutum HOM05D000860 ORTHO05D006064 7.7e-06 53.1 54 51.9


User provided reference genes

Program Settings