Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032864.2 Cucumis melo HOM05D001358 ORTHO05D001154 3.1e-153 545.0 268 100.0
ClCG07G012830 Citrullus lanatus HOM05D001358 ORTHO05D001154 3.4e-30 136.3 195 45.1
CsaV3_4G001360 Cucumis sativus L. HOM05D001358 ORTHO05D001154 8.6e-18 95.1 187 36.9
Sed0010929 Sechium edule HOM05D001358 ORTHO05D001154 5.0e-10 69.3 146 34.2
DCAR_027236 Daucus carota HOM05D001358 ORTHO05D001154 5.6e-09 65.9 94 37.2
Dinv11622 Davidia involucrata HOM05D001358 ORTHO05D001154 5.6e-09 65.9 119 36.1
Migut.E01471 Erythranthe guttata HOM05D001358 ORTHO05D001154 9.5e-09 65.1 113 34.5
Hma1.2p1_0602F.1_g187530 Hydrangea macrophylla HOM05D001358 ORTHO05D001154 9.5e-09 65.1 91 37.4
Sc25g0004280 Simmondsia chinensis HOM05D001358 ORTHO05D001154 1.2e-08 64.7 95 33.7
PGSC0003DMG400023147 Solanum tuberosum HOM05D001358 ORTHO05D001154 1.2e-08 64.7 105 37.1
Solyc08g067150.4 Solanum lycopersicum HOM05D001358 ORTHO05D001154 2.1e-08 63.9 113 36.3
Hma1.2p1_0000F.1_g000630 Hydrangea macrophylla HOM05D001358 ORTHO05D001154 3.6e-08 63.2 101 37.6
Sp3g20475 Schrenkiella parvula HOM05D001358 ORTHO05D001154 3.6e-08 63.2 111 36.0
CiPaw.01G243900 Carya illinoinensis HOM05D001358 ORTHO05D001154 4.7e-08 62.8 123 37.4
DCAR_024178 Daucus carota HOM05D001358 ORTHO05D001154 4.7e-08 62.8 107 34.6
AUR62004910 Chenopodium quinoa HOM05D001358 ORTHO05D001154 8.0e-08 62.0 94 37.2
FAN14G5711 Fragaria x ananassa HOM05D001358 ORTHO05D001154 8.0e-08 62.0 96 39.6
Hund06954 Selenicereus undatus HOM05D001358 ORTHO05D001154 8.0e-08 62.0 94 36.2
Duzib150G0799 Durio zibethinus HOM05D001358 ORTHO05D001154 1.0e-07 61.6 89 37.1
AUR62001045 Chenopodium quinoa HOM05D001358 ORTHO05D001154 1.4e-07 61.2 129 32.6
Oeu042813.3 Olea europaea HOM05D001358 ORTHO05D001154 1.4e-07 61.2 89 37.1
Potri.006G251200 Populus trichocarpa HOM05D001358 ORTHO05D001154 1.4e-07 61.2 177 29.4
Ciclev10007369m.g Citrus clementina HOM05D001358 ORTHO05D001154 1.8e-07 60.8 100 37.0
Rhsim07G0147800 Rhododendron simsii HOM05D001358 ORTHO05D001154 1.8e-07 60.8 103 35.9
COL.COLO4_12886 Corchorus olitorius HOM05D001358 ORTHO05D001154 2.3e-07 60.5 79 40.5
FvH4_6g30420 Fragaria vesca HOM05D001358 ORTHO05D001154 2.3e-07 60.5 96 38.5
Nitab4.5_0000085g0300 Nicotiana tabacum HOM05D001358 ORTHO05D001154 2.3e-07 60.5 51 52.9
Oeu030207.1 Olea europaea HOM05D001358 ORTHO05D001154 2.3e-07 60.5 123 33.3
Sopen08g021070 Solanum pennellii HOM05D001358 ORTHO05D001154 2.3e-07 60.5 113 35.4
Thecc.09G149500 Theobroma cacao HOM05D001358 ORTHO05D001154 2.3e-07 60.5 126 34.1
FAN05G3742 Fragaria x ananassa HOM05D001358 ORTHO05D001154 3.1e-07 60.1 97 38.1
Gohir.A02G112600 Gossypium hirsutum HOM05D001358 ORTHO05D001154 3.1e-07 60.1 123 35.0
Lsat_1_v5_gn_6_22281 Lactuca sativa HOM05D001358 ORTHO05D001154 3.1e-07 60.1 80 38.8
Hund25727 Selenicereus undatus HOM05D001358 ORTHO05D001154 3.1e-07 60.1 118 32.2
Cc11_g01890 Coffea canephora HOM05D001358 ORTHO05D001154 4.0e-07 59.7 83 39.8
Glyma.10G245500 Glycine max HOM05D001358 ORTHO05D001154 4.0e-07 59.7 94 35.1
Haze_21558 Corylus avellana HOM05D001358 ORTHO05D001154 5.2e-07 59.3 100 35.0
Dinv30170 Davidia involucrata HOM05D001358 ORTHO05D001154 5.2e-07 59.3 140 32.1
Glyma.20G149100 Glycine max HOM05D001358 ORTHO05D001154 5.2e-07 59.3 94 35.1
Manes.16G119900 Manihot esculenta HOM05D001358 ORTHO05D001154 5.2e-07 59.3 137 30.7
Nitab4.5_0002406g0010 Nicotiana tabacum HOM05D001358 ORTHO05D001154 5.2e-07 59.3 51 51.0
Sc23g0006890 Simmondsia chinensis HOM05D001358 ORTHO05D001154 5.2e-07 59.3 123 34.1
VMungo0720G2732 Vigna mungo HOM05D001358 ORTHO05D001154 5.2e-07 59.3 94 35.1
SMO174G0066 Selaginella moellendorffii HOM05D001358 ORTHO05D001154 6.8e-07 58.9 104 37.5
COL.COLO4_23979 Corchorus olitorius HOM05D001358 ORTHO05D001154 8.9e-07 58.5 123 32.5
Duzib187G1050 Durio zibethinus HOM05D001358 ORTHO05D001154 8.9e-07 58.5 123 31.7
MD15G1121200 Malus domestica HOM05D001358 ORTHO05D001154 8.9e-07 58.5 121 31.4
QL05p027578 Quercus lobata HOM05D001358 ORTHO05D001154 8.9e-07 58.5 112 35.7
MSTRG.25850 Avicennia marina HOM05D001358 ORTHO05D001154 1.2e-06 58.2 177 27.7
Nn8g39374 Nelumbo nucifera HOM05D001358 ORTHO05D001154 1.2e-06 58.2 100 37.0
TAR383G1052 Trochodendron aralioides HOM05D001358 ORTHO05D001154 1.2e-06 58.2 101 34.7
Gohir.A13G206800 Gossypium hirsutum HOM05D001358 ORTHO05D001154 1.5e-06 57.8 127 29.9
Potri.018G030000 Populus trichocarpa HOM05D001358 ORTHO05D001154 1.5e-06 57.8 100 37.0
RcHm_v2.0_Chr2g0136761 Rosa chinensis HOM05D001358 ORTHO05D001154 1.5e-06 57.8 181 28.7
Hund22129 Selenicereus undatus HOM05D001358 ORTHO05D001154 1.5e-06 57.8 101 33.7
TWI34G1493 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 1.5e-06 57.8 110 31.8
Actinidia14619 Actinidia chinensis HOM05D001358 ORTHO05D001154 2.0e-06 57.4 135 32.6
EL10Ac4g09092 Beta vulgaris HOM05D001358 ORTHO05D001154 2.0e-06 57.4 144 27.1
Gorai.013G110900 Gossypium raimondii HOM05D001358 ORTHO05D001154 2.0e-06 57.4 159 30.8
MBI01_g11880_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D005966 2.0e-06 57.4 96 33.3
MD08G1145800 Malus domestica HOM05D001358 ORTHO05D001154 2.0e-06 57.4 157 28.7
Gohir.D03G060612 Gossypium hirsutum HOM05D001358 ORTHO05D001154 2.6e-06 57.0 159 32.1
Lj7A719T45 Lonicera japonica HOM05D001358 ORTHO05D001154 2.6e-06 57.0 109 34.9
Oeu020098.1 Olea europaea HOM05D001358 ORTHO05D001154 2.6e-06 57.0 120 34.2
AL3G15020 Arabidopsis lyrata HOM05D001358 ORTHO05D001154 3.4e-06 56.6 83 36.1
EL10Ac2g02597 Beta vulgaris HOM05D001358 ORTHO05D001154 3.4e-06 56.6 127 32.3
TWI32G0159 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 3.4e-06 56.6 105 33.3
Atru.chr1.3107 Acer truncatum HOM05D001358 ORTHO05D001154 4.4e-06 56.2 100 34.0
AT3G04850 Arabidopsis thaliana HOM05D001358 ORTHO05D001154 4.4e-06 56.2 79 35.4
Gorai.013G241500 Gossypium raimondii HOM05D001358 ORTHO05D001154 4.4e-06 56.2 127 29.9
TWI12G0268 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 4.4e-06 56.2 167 26.9
vmacro05192 Vaccinium macrocarpon HOM05D001358 ORTHO05D001154 4.4e-06 56.2 121 33.1
SEGI_26140 Sequoiadendron giganteum HOM05D001358 ORTHO05D001154 5.8e-06 55.8 100 36.0
FAN09G0345 Fragaria x ananassa HOM05D001358 ORTHO05D001154 7.5e-06 55.5 46 54.3
Gohir.D13G211400 Gossypium hirsutum HOM05D001358 ORTHO05D001154 7.5e-06 55.5 127 29.9
Nn2g11942 Nelumbo nucifera HOM05D001358 ORTHO05D001154 7.5e-06 55.5 202 25.7
Phvul.007G060500 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 7.5e-06 55.5 174 27.0
RcHm_v2.0_Chr6g0298531 Rosa chinensis HOM05D001358 ORTHO05D001154 7.5e-06 55.5 120 29.2
TAR625G0494 Trochodendron aralioides HOM05D001358 ORTHO05D001154 7.5e-06 55.5 109 32.1
FAN02G1631 Fragaria x ananassa HOM05D001358 ORTHO05D001154 9.8e-06 55.1 46 54.3
Lj5g0003410 Lotus japonicus HOM05D001358 ORTHO05D001154 9.8e-06 55.1 103 34.0
Manes.04G117200 Manihot esculenta HOM05D001358 ORTHO05D001154 9.8e-06 55.1 105 34.3
QL02p022416 Quercus lobata HOM05D001358 ORTHO05D001154 9.8e-06 55.1 194 28.9


User provided reference genes

Program Settings