Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.8e-51 204.5 103 100.0
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.4e-37 157.5 81 100.0
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.6e-36 156.0 81 98.8
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.8e-33 145.2 81 93.8
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.5e-31 139.4 81 88.9
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 5.4e-21 104.4 81 67.9
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 3.0e-19 98.6 106 53.8
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 2.0e-15 85.9 76 56.6
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.3e-14 83.2 79 58.2
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.7e-14 82.8 77 54.5
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.2e-14 82.4 80 55.0
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 3.8e-14 81.6 81 50.6
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 4.9e-14 81.3 78 52.6
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 6.4e-14 80.9 77 54.5
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 8.4e-14 80.5 83 54.2
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.1e-13 80.1 73 52.1
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.4e-13 79.7 83 54.2
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.4e-13 79.0 81 53.1
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 3.2e-13 78.6 81 55.6
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.2e-13 78.6 86 52.3
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 9.3e-13 77.0 78 55.1
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 9.3e-13 77.0 87 48.3
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 9.3e-13 77.0 61 60.7
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-12 76.6 77 57.1
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.6e-12 76.3 80 48.8
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.1e-12 75.9 65 61.5
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.1e-12 75.9 65 61.5
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 2.1e-12 75.9 86 48.8
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 2.7e-12 75.5 83 48.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 3.5e-12 75.1 88 47.7
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.0e-11 73.6 83 54.2
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.0e-11 73.6 84 47.6
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.3e-11 73.2 70 54.3
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.3e-11 73.2 65 56.9
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.3e-11 73.2 62 56.5
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-11 73.2 84 47.6
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-11 73.2 84 47.6
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.3e-11 73.2 86 48.8
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 3.0e-11 72.0 76 50.0
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.0e-11 72.0 66 57.6
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.0e-11 72.0 77 45.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 5.1e-11 71.2 66 56.1
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 8.7e-11 70.5 84 46.4
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 8.7e-11 70.5 62 54.8
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.1e-10 70.1 81 48.1
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.5e-10 69.7 66 57.6
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.9e-10 69.3 74 50.0
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.5e-10 68.9 66 54.5
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 2.5e-10 68.9 81 48.1
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 3.3e-10 68.6 66 54.5
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 4.3e-10 68.2 79 44.3
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 7.3e-10 67.4 77 40.3
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.1e-09 65.9 77 39.0
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.8e-09 65.5 81 49.4
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 3.6e-09 65.1 80 46.2
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 3.6e-09 65.1 86 43.0
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 3.6e-09 65.1 77 44.2
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.8e-09 64.7 62 54.8
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 6.2e-09 64.3 70 45.7
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 6.2e-09 64.3 77 37.7
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 6.2e-09 64.3 85 37.6
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 8.1e-09 63.9 66 42.4
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.1e-08 63.5 76 40.8
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.8e-08 62.8 82 45.1
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.4e-08 62.4 66 47.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.4e-08 62.4 77 49.4
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.4e-08 62.4 82 45.1
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 2.4e-08 62.4 62 46.8
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 2.4e-08 62.4 82 46.3
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 2.4e-08 62.4 60 55.0
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 3.1e-08 62.0 75 45.3
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 4.0e-08 61.6 83 41.0
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.0e-08 61.6 66 42.4
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 5.3e-08 61.2 66 47.0
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 9.0e-08 60.5 71 43.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.2e-07 60.1 67 44.8
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.2e-07 60.1 60 50.0
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.5e-07 59.7 79 38.0
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.5e-07 59.7 69 49.3
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.0e-07 59.3 84 40.5
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 2.6e-07 58.9 77 42.9
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.6e-07 58.9 70 44.3
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 3.4e-07 58.5 60 48.3
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 3.4e-07 58.5 61 45.9
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 3.4e-07 58.5 61 45.9
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.5e-07 58.2 61 45.9
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 4.5e-07 58.2 67 43.3
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 4.5e-07 58.2 67 43.3
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 5.8e-07 57.8 82 37.8
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 7.6e-07 57.4 80 40.0
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 7.6e-07 57.4 86 38.4
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 7.6e-07 57.4 82 37.8
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 7.6e-07 57.4 86 38.4
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 7.6e-07 57.4 84 38.1
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.3e-06 56.6 87 36.8
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.7e-06 56.2 78 38.5
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.7e-06 56.2 79 40.5
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 2.2e-06 55.8 87 37.9
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.2e-06 55.8 84 39.3
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 3.8e-06 55.1 57 42.1
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 4.9e-06 54.7 75 38.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 4.9e-06 54.7 63 46.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 6.4e-06 54.3 73 46.6
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 6.4e-06 54.3 73 39.7
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 8.4e-06 53.9 61 42.6
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 8.4e-06 53.9 70 47.1
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 8.4e-06 53.9 60 43.3


User provided reference genes

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