Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 5.9e-300 1033.5 543 100.0
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 6.7e-179 631.3 507 69.8
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 5.2e-171 605.1 508 68.1
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 4.4e-162 575.5 507 64.9
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 6.8e-131 471.9 373 65.7
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 2.6e-130 469.9 376 65.2
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 3.4e-130 469.5 369 68.6
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 1.4e-128 464.2 404 62.4
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 3.2e-128 463.0 372 65.1
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 7.8e-127 458.4 374 64.7
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.2e-124 451.1 377 64.5
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 2.1e-124 450.3 375 63.7
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.8e-124 449.9 369 64.5
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 6.8e-123 445.3 362 66.3
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 8.9e-123 444.9 370 63.0
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 1.7e-121 440.7 368 64.1
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 1.7e-121 440.7 368 64.1
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 2.2e-121 440.3 362 64.1
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 6.4e-121 438.7 371 63.9
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 2.4e-120 436.8 368 62.8
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 1.5e-117 427.6 408 57.6
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 2.5e-117 426.8 362 62.4
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.3e-117 426.4 382 61.0
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 3.3e-117 426.4 377 61.5
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 4.3e-117 426.0 371 61.5
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 7.3e-117 425.2 382 60.7
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 7.3e-117 425.2 357 63.0
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 1.6e-116 424.1 366 61.7
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 2.8e-116 423.3 388 60.6
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 3.6e-116 422.9 388 59.3
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 3.6e-116 422.9 383 59.8
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 8.1e-116 421.8 377 61.0
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 3.1e-115 419.9 377 59.7
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 5.2e-115 419.1 366 61.2
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 5.2e-115 419.1 325 66.2
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 5.2e-115 419.1 376 60.4
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 5.2e-115 419.1 377 59.4
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.6e-114 416.8 369 61.8
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 5.8e-114 415.6 373 59.5
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 7.6e-114 415.2 366 62.3
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 2.9e-113 413.3 365 60.3
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 6.4e-113 412.1 402 55.7
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 6.4e-113 412.1 325 64.9
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 6.4e-113 412.1 391 56.8
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.1e-112 411.4 379 59.9
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.4e-112 411.0 365 61.9
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 1.9e-112 410.6 373 60.6
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 2.4e-112 410.2 372 58.6
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 3.2e-112 409.8 362 61.0
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 3.2e-112 409.8 387 56.8
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 5.4e-112 409.1 377 58.9
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 7.1e-112 408.7 393 55.7
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 1.6e-111 407.5 388 56.2
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.1e-111 407.1 378 59.5
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 4.6e-111 406.0 367 59.7
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 6.0e-111 405.6 391 56.5
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 7.8e-111 405.2 370 58.1
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 2.3e-110 403.7 370 59.2
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 2.3e-110 403.7 368 60.1
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 3.9e-110 402.9 365 58.6
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 5.1e-110 402.5 368 60.1
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 8.7e-110 401.7 329 62.9
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 8.7e-110 401.7 368 60.3
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 2.5e-109 400.2 393 54.2
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 3.3e-109 399.8 361 59.0
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 3.3e-109 399.8 395 54.9
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.3e-109 399.8 369 58.8
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 5.6e-109 399.1 508 47.0
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 1.3e-108 397.9 368 58.7
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 2.8e-108 396.7 392 55.6
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 3.6e-108 396.4 306 67.3
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 8.1e-108 395.2 371 57.1
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 1.1e-107 394.8 400 54.5
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 1.4e-107 394.4 371 58.2
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 1.8e-107 394.0 363 59.0
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 1.8e-107 394.0 363 59.0
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 3.1e-107 393.3 367 58.0
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.2e-106 391.3 362 58.8
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 5.8e-106 389.0 365 58.1
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 9.9e-106 388.3 391 55.8
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 2.4e-104 383.6 374 56.7
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 2.4e-104 383.6 412 52.7
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 2.4e-104 383.6 365 58.6
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 2.4e-104 383.6 370 57.8
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 9.6e-101 371.7 325 60.3
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.1e-100 368.6 373 55.0
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 8.1e-100 368.6 317 59.9
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 2.0e-98 364.0 354 55.6
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 9.9e-98 361.7 374 54.8
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.1e-96 358.2 332 57.2
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 1.6e-95 354.4 362 56.4
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 5.3e-91 339.3 344 54.9
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 1.2e-90 338.2 372 50.8
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 1.5e-90 337.8 274 65.3
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.5e-90 337.8 344 54.7
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 7.6e-90 335.5 337 54.0
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 7.1e-88 328.9 218 72.5
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.7e-87 327.0 365 52.1
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 4.6e-87 326.2 304 56.2
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 2.5e-85 320.5 289 59.2
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 5.9e-82 309.3 303 60.1
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.2e-81 307.4 289 57.1
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.9e-80 304.3 243 62.6
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 1.6e-76 291.2 256 62.1
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.4e-75 287.3 218 65.1
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 6.9e-75 285.8 386 47.2
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 2.6e-74 283.9 256 57.0
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 5.9e-74 282.7 360 48.3
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 2.9e-73 280.4 357 44.5
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 1.9e-72 277.7 320 48.4
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.6e-71 273.1 260 57.3
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 5.1e-70 269.6 345 44.9
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 2.2e-65 254.2 360 43.3
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 8.8e-62 242.3 275 49.5
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 2.3e-46 191.0 122 77.9
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 1.6e-39 168.3 155 60.6
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 4.7e-39 166.8 306 35.9
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 4.7e-39 166.8 167 53.3
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.5e-34 150.6 360 34.4
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.7e-33 148.3 247 40.5
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 6.6e-33 146.4 136 61.8
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.3e-32 143.7 354 34.2
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 2.6e-29 134.4 107 59.8
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 5.4e-27 126.7 133 54.1
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 2.0e-26 124.8 136 50.7
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 4.0e-22 110.5 145 47.6
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.0e-22 110.5 125 46.4
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.7e-18 97.8 150 48.0
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 1.7e-17 95.1 276 27.5
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 3.3e-16 90.9 230 30.4
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 7.3e-16 89.7 73 64.4
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 4.9e-12 77.0 44 70.5


User provided reference genes

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