Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030596.2 Cucumis melo HOM05D003093 ORTHO05D023197 2.9e-52 208.4 113 100.0
MELO3C026299.2 Cucumis melo HOM05D000042 ORTHO05D000028 9.5e-19 97.1 62 85.5
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.2e-18 96.7 62 83.9
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 2.8e-18 95.5 61 86.9
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 8.0e-18 94.0 89 68.5
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 1.1e-17 93.6 89 67.4
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 1.1e-17 93.6 61 85.2
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 1.8e-17 92.8 89 67.4
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 8.9e-17 90.5 70 77.1
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 4.4e-16 88.2 104 56.7
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 5.8e-16 87.8 80 67.5
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 5.8e-16 87.8 61 82.0
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 9.8e-16 87.0 78 71.8
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 9.8e-16 87.0 61 80.3
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 1.3e-15 86.7 78 67.9
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.3e-15 86.7 61 80.3
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 1.7e-15 86.3 71 76.1
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 2.2e-15 85.9 74 71.6
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 2.2e-15 85.9 61 80.3
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 2.9e-15 85.5 61 80.3
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 3.7e-15 85.1 78 71.8
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 4.9e-15 84.7 61 78.7
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 6.4e-15 84.3 61 78.7
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 1.1e-14 83.6 62 75.8
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 1.1e-14 83.6 71 73.2
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 1.4e-14 83.2 78 65.4
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 1.9e-14 82.8 90 57.8
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 2.4e-14 82.4 91 61.5
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 2.4e-14 82.4 92 60.9
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 2.4e-14 82.4 89 58.4
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 3.2e-14 82.0 93 60.2
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 4.1e-14 81.6 101 57.4
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 4.1e-14 81.6 90 57.8
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 5.4e-14 81.3 70 70.0
Hund22429 Selenicereus undatus HOM05D003093 ORTHO05D004301 5.4e-14 81.3 70 70.0
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 7.0e-14 80.9 103 54.4
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 7.0e-14 80.9 85 63.5
Atru.chr12.587 Acer truncatum HOM05D003093 ORTHO05D023197 1.2e-13 80.1 61 75.4
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 1.2e-13 80.1 67 70.1
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 1.6e-13 79.7 62 79.0
ClCG07G016030 Citrullus lanatus HOM05D000042 ORTHO05D000028 2.7e-13 79.0 63 74.6
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 3.5e-13 78.6 62 77.4
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 3.5e-13 78.6 92 59.8
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 4.6e-13 78.2 77 67.5
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 4.6e-13 78.2 91 56.0
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 4.6e-13 78.2 77 62.3
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 4.6e-13 78.2 75 64.0
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 6.0e-13 77.8 92 62.0
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 6.0e-13 77.8 87 59.8
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 7.8e-13 77.4 102 52.0
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 1.3e-12 76.6 77 62.3
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 2.3e-12 75.9 83 60.2
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 3.0e-12 75.5 92 59.8
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 3.0e-12 75.5 87 55.2
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 3.0e-12 75.5 61 73.8
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 5.0e-12 74.7 77 61.0
MELO3C028485.2 Cucumis melo HOM05D004605 ORTHO05D023197 6.6e-12 74.3 41 92.7
Oeu009483.1 Olea europaea HOM05D003093 ORTHO05D004301 8.6e-12 73.9 98 53.1
Oeu009484.1 Olea europaea HOM05D003093 ORTHO05D004301 8.6e-12 73.9 98 53.1
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 1.1e-11 73.6 87 54.0
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 1.1e-11 73.6 61 73.8
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.5e-11 73.2 101 50.5
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.9e-11 72.8 106 49.1
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 2.5e-11 72.4 102 50.0
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 2.5e-11 72.4 77 59.7
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 4.3e-11 71.6 79 60.8
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 1.2e-10 70.1 111 51.4
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 1.6e-10 69.7 79 63.3
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 2.1e-10 69.3 90 55.6
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 2.1e-10 69.3 90 55.6
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 2.1e-10 69.3 50 76.0
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 2.1e-10 69.3 58 69.0
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 4.7e-10 68.2 94 55.3
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 4.7e-10 68.2 89 52.8
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.4e-09 66.6 70 58.6
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 6.8e-09 64.3 61 62.3
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.8e-09 64.3 79 55.7
FAN23G2086 Fragaria x ananassa HOM05D000539 ORTHO05D023197 6.8e-09 64.3 78 55.1
FAN25G2354 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.8e-09 64.3 78 55.1
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 6.8e-09 64.3 70 60.0
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 8.9e-09 63.9 76 57.9
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 8.9e-09 63.9 76 57.9
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 8.9e-09 63.9 76 57.9
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 8.9e-09 63.9 76 57.9
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 8.9e-09 63.9 76 57.9
Nitab4.5_0000914g0160 Nicotiana tabacum HOM05D003093 ORTHO05D023197 8.9e-09 63.9 70 58.6
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 8.9e-09 63.9 61 63.9
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 1.5e-08 63.2 77 53.2
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 2.0e-08 62.8 80 57.5
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 2.0e-08 62.8 79 55.7
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 2.6e-08 62.4 77 57.1
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.6e-08 62.4 63 63.5
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 7.5e-08 60.8 55 74.5
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 7.5e-08 60.8 55 74.5
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 7.5e-08 60.8 55 74.5
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 7.5e-08 60.8 55 74.5
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 7.5e-08 60.8 55 74.5
DCAR_027695 Daucus carota HOM05D003093 ORTHO05D004301 7.5e-08 60.8 71 56.3
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.3e-07 60.1 81 61.7
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.3e-07 60.1 89 47.2
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.7e-07 59.7 61 65.6
FvH4_2g04410 Fragaria vesca HOM05D003093 ORTHO05D004301 2.9e-07 58.9 61 59.0
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 3.7e-07 58.5 70 54.3
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 4.9e-07 58.2 61 63.9
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 4.9e-07 58.2 61 63.9
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 4.9e-07 58.2 70 60.0
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 4.9e-07 58.2 70 60.0
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 6.4e-07 57.8 103 44.7
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 8.3e-07 57.4 61 63.9
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.1e-06 57.0 70 58.6
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 1.1e-06 57.0 64 59.4
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 1.9e-06 56.2 83 55.4
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 1.9e-06 56.2 65 58.5
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 4.1e-06 55.1 61 60.7


User provided reference genes

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