Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030005.2 Cucumis melo HOM05D000572 ORTHO05D015581 3.6e-17 90.5 46 100.0
MELO3C023297.2 Cucumis melo HOM05D000572 ORTHO05D015581 1.7e-11 71.6 41 90.2
MELO3C028655.2 Cucumis melo HOM05D000572 ORTHO05D015581 1.9e-10 68.2 41 82.9
MELO3C032949.2 Cucumis melo HOM05D000572 ORTHO05D015581 1.9e-10 68.2 41 85.4
MELO3C029513.2 Cucumis melo HOM05D000572 ORTHO05D015581 2.5e-10 67.8 41 82.9
ClCG06G006050 Citrullus lanatus HOM05D000572 ORTHO05D000840 1.6e-09 65.1 41 80.5
MELO3C014487.2 Cucumis melo HOM05D000572 ORTHO05D000840 1.6e-09 65.1 41 80.5
CsaV3_6G038240 Cucumis sativus L. HOM05D000572 ORTHO05D000840 1.6e-09 65.1 41 80.5
MELO3C032994.2 Cucumis melo HOM05D000572 ORTHO05D015581 2.8e-09 64.3 39 87.2
unitig_22.g6328 Utricularia gibba HOM05D000572 ORTHO05D000840 3.6e-09 63.9 41 78.0
MSTRG.21845 Avicennia marina HOM05D000572 ORTHO05D000840 4.7e-09 63.5 41 78.0
SalBow5G2083 Salvia bowleyana HOM05D000572 ORTHO05D000840 4.7e-09 63.5 41 78.0
SalBow5G5613 Salvia bowleyana HOM05D000572 ORTHO05D000840 4.7e-09 63.5 41 78.0
Sed0002312 Sechium edule HOM05D000572 ORTHO05D000840 4.7e-09 63.5 41 78.0
Sed0013775 Sechium edule HOM05D000572 ORTHO05D000840 4.7e-09 63.5 41 78.0
SGA_v2.0_scaffold10G05099 Striga asiatica HOM05D000572 ORTHO05D000840 4.7e-09 63.5 41 78.0
Aqoxy2G03356 Aquilegia oxysepala HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
arahy.Tifrunner.gnm1.ann1.SGT6TA Arachis hypogaea HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
CSS0034253 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
CAN.G907.24 Capsicum annuum HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Cfa015621 Carpinus fangiana HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
CiPaw.01G164100 Carya illinoinensis HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
CiPaw.02G095700 Carya illinoinensis HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
CDE05G0240 Ceratophyllum demersum HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
COL.COLO4_06192 Corchorus olitorius HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Haze_00923 Corylus avellana HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
DCAR_027188 Daucus carota HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Dinv44509 Davidia involucrata HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Duzib212G0457 Durio zibethinus HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
ECA240G0830 Erigeron canadensis HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Migut.N00173 Erythranthe guttata HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Eucgr.F01498 Eucalyptus grandis HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Eucgr.H03545 Eucalyptus grandis HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Gohir.D10G151400 Gossypium hirsutum HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Gorai.011G168600 Gossypium raimondii HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
HanXRQChr10g0303141 Helianthus annuus HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Lsat_1_v5_gn_7_65741 Lactuca sativa HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Lj3A740G52 Lonicera japonica HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
MD13G1188900 Malus domestica HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
MD16G1189700 Malus domestica HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Nitab4.5_0000795g0040 Nicotiana tabacum HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Nitab4.5_0008386g0010 Nicotiana tabacum HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Oeu034362.1 Olea europaea HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
PSO170G4847 Papaver somniferum HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
PSO302G0089 Papaver somniferum HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Potri.010G090100 Populus trichocarpa HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Prupe.1G156000 Prunus persica HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
PGR004G2523 Punica granatum HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
QL06p003211 Quercus lobata HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Rhsim02G0022800 Rhododendron simsii HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
RcHm_v2.0_Chr4g0416741 Rosa chinensis HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Solyc09g075800.4 Solanum lycopersicum HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Sopen09g030610 Solanum pennellii HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Thecc.04G227900 Theobroma cacao HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
TWI73G0146 Tripterygium wilfordii HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
TAR636G1672 Trochodendron aralioides HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
vmacro15328 Vaccinium macrocarpon HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
GSVIVG01017933001 Vitis vinifera HOM05D000572 ORTHO05D000840 6.2e-09 63.2 41 75.6
Atru.chr4.2505 Acer truncatum HOM05D000572 ORTHO05D000840 8.1e-09 62.8 39 79.5
Aa31LG11G10300 Aethionema arabicum HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
AL6G38250 Arabidopsis lyrata HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
AT5G26240 Arabidopsis thaliana HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
BcaNung02813 Brassica carinata HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
BcaNung03971 Brassica carinata HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
A06p36740 Brassica napus HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
C07p41790 Brassica napus HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
BolC7t44710H Brassica oleracea HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
BraA06t26596Z Brassica rapa HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
Carub.0006s2406 Capsella rubella HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
Cpa.g.sc508.1 Carica papaya HOM05D000572 ORTHO05D015581 8.1e-09 62.8 40 77.5
Thhalv10003643m.g Eutrema salsugineum HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
Glyma.01G239000 Glycine max HOM05D000572 ORTHO05D000840 8.1e-09 62.8 41 75.6
Glyma.11G004600 Glycine max HOM05D000572 ORTHO05D000840 8.1e-09 62.8 41 75.6
Manes.15G027000 Manihot esculenta HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
Nn1g02253 Nelumbo nucifera HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
Phvul.002G047000 Phaseolus vulgaris HOM05D000572 ORTHO05D000840 8.1e-09 62.8 41 75.6
Sp2g21510 Schrenkiella parvula HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
THA.LOC104802763 Tarenaya hassleriana HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
THA.LOC104818777 Tarenaya hassleriana HOM05D000572 ORTHO05D000840 8.1e-09 62.8 40 77.5
VMungo1215G0056 Vigna mungo HOM05D000572 ORTHO05D000840 8.1e-09 62.8 41 75.6
Ah.13g073920 Amaranthus hybridus HOM05D000572 ORTHO05D000840 1.1e-08 62.4 41 75.6
EL10Ac3g06440 Beta vulgaris HOM05D000572 ORTHO05D000840 1.1e-08 62.4 41 75.6
FvH4_4g15130 Fragaria vesca HOM05D000572 ORTHO05D000840 1.1e-08 62.4 41 75.6
Lalb_Chr09g0319771 Lupinus albus HOM05D000572 ORTHO05D000840 1.4e-08 62.0 41 73.2
Nn4g26268 Nelumbo nucifera HOM05D000572 ORTHO05D000840 1.4e-08 62.0 40 77.5
TWI09G1185 Tripterygium wilfordii HOM05D000572 ORTHO05D000840 1.4e-08 62.0 41 73.2
Cc03_g03520 Coffea canephora HOM05D000572 ORTHO05D000840 1.8e-08 61.6 41 73.2
Dinv38429 Davidia involucrata HOM05D000572 ORTHO05D000840 1.8e-08 61.6 41 73.2
Sabra10G0053200 Salix brachista HOM05D000572 ORTHO05D000840 1.8e-08 61.6 41 73.2
Lj1g0004536 Lotus japonicus HOM05D000572 ORTHO05D000840 2.4e-08 61.2 41 70.7
MBI04_g17680_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D000840 2.4e-08 61.2 41 73.2
MBI04_g33422_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D000840 2.4e-08 61.2 41 73.2
Medtr5g005990 Medicago truncatula HOM05D000572 ORTHO05D000840 2.4e-08 61.2 41 70.7
Psat4g212280 Pisum sativum HOM05D000572 ORTHO05D000840 2.4e-08 61.2 41 70.7
Sc19g0004290 Simmondsia chinensis HOM05D000572 ORTHO05D000840 2.4e-08 61.2 41 75.6
TPR.G37927 Trifolium pratense HOM05D000572 ORTHO05D000840 2.4e-08 61.2 41 70.7
Actinidia08504 Actinidia chinensis HOM05D000572 ORTHO05D000840 3.1e-08 60.8 41 73.2
Actinidia36979 Actinidia chinensis HOM05D000572 ORTHO05D000840 3.1e-08 60.8 41 73.2
HPP92_024872 Vanilla planifolia HOM05D000572 ORTHO05D000840 3.1e-08 60.8 41 73.2
Zm00001eb053800 Zea mays HOM05D000572 ORTHO05D000840 3.1e-08 60.8 41 73.2
Ciclev10004375m.g Citrus clementina HOM05D000572 ORTHO05D000840 4.0e-08 60.5 41 73.2
Gohir.A01G023500 Gossypium hirsutum HOM05D000572 ORTHO05D000840 4.0e-08 60.5 41 70.7
Gohir.D01G021500 Gossypium hirsutum HOM05D000572 ORTHO05D000840 4.0e-08 60.5 41 70.7
Gorai.002G024000 Gossypium raimondii HOM05D000572 ORTHO05D000840 4.0e-08 60.5 41 70.7
Hund22744 Selenicereus undatus HOM05D000572 ORTHO05D000840 4.0e-08 60.5 41 73.2
Ca_24388_v3 Cicer arietinum L. HOM05D000572 ORTHO05D000840 5.2e-08 60.1 41 68.3
Os03g0695700 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D000840 5.2e-08 60.1 38 78.9
SEGI_35846 Sequoiadendron giganteum HOM05D000572 ORTHO05D000840 5.2e-08 60.1 41 70.7
ATR0332G025 Amborella trichopoda HOM05D000572 ORTHO05D000840 8.9e-08 59.3 40 72.5
AagrBONN_evm.TU.Sc2ySwM_228.2587 Anthoceros agrestis HOM05D000572 ORTHO05D000840 8.9e-08 59.3 41 70.7
Mapoly0061s0111 Marchantia polymorpha HOM05D000572 ORTHO05D000840 1.5e-07 58.5 40 72.5
Pp3c23_11120 Physcomitrium patens HOM05D000572 ORTHO05D000840 2.0e-07 58.2 41 68.3
Pp3c23_5320 Physcomitrium patens HOM05D000572 ORTHO05D000840 2.0e-07 58.2 41 68.3
arahy.Tifrunner.gnm1.ann1.F4UJXV Arachis hypogaea HOM05D000572 ORTHO05D000840 3.4e-07 57.4 41 70.7
SMO358G0691 Selaginella moellendorffii HOM05D000572 ORTHO05D000840 3.4e-07 57.4 41 68.3
RcHm_v2.0_Chr1g0360351 Rosa chinensis HOM05D000572 ORTHO05D015581 9.9e-07 55.8 35 80.0
CANSAT78G1323 Cannabis sativa HOM05D000572 ORTHO05D000840 1.3e-06 55.5 41 68.3
MELO3C032435.2 Cucumis melo HOM05D000572 ORTHO05D015581 2.2e-06 54.7 35 82.9
MELO3C031904.2 Cucumis melo HOM05D000572 ORTHO05D015581 3.8e-06 53.9 35 80.0
Pp3c2_27650 Physcomitrium patens HOM05D000572 ORTHO05D000840 3.8e-06 53.9 39 66.7
Ciclev10000336m.g Citrus clementina HOM05D000572 ORTHO05D000840 6.4e-06 53.1 41 53.7
Dinv29671 Davidia involucrata HOM05D000572 ORTHO05D000840 6.4e-06 53.1 41 56.1
EL10Ac4g09703 Beta vulgaris HOM05D000572 ORTHO05D000840 8.4e-06 52.8 41 53.7
CAN.G855.43 Capsicum annuum HOM05D000572 ORTHO05D000840 8.4e-06 52.8 41 53.7
Ca_00026_v3 Cicer arietinum L. HOM05D000572 ORTHO05D000840 8.4e-06 52.8 41 53.7
DCAR_001715 Daucus carota HOM05D000572 ORTHO05D000840 8.4e-06 52.8 41 53.7
DCAR_022280 Daucus carota HOM05D000572 ORTHO05D000840 8.4e-06 52.8 41 53.7
ECA236G1954 Erigeron canadensis HOM05D000572 ORTHO05D000840 8.4e-06 52.8 41 58.5
Eucgr.I02790 Eucalyptus grandis HOM05D000572 ORTHO05D000840 8.4e-06 52.8 41 53.7
PGSC0003DMG400024904 Solanum tuberosum HOM05D000572 ORTHO05D000840 8.4e-06 52.8 41 53.7
THA.LOC104806671 Tarenaya hassleriana HOM05D000572 ORTHO05D000840 8.4e-06 52.8 41 56.1


User provided reference genes

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