Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 7.3e-136 487.3 254 100.0
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 1.4e-123 446.4 253 91.7
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 3.1e-118 428.7 258 87.2
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 3.9e-89 332.0 221 82.4
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 1.4e-78 297.0 237 64.1
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 1.7e-76 290.0 238 62.2
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 2.9e-76 289.3 261 58.2
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 3.8e-76 288.9 252 59.5
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 3.0e-73 279.3 252 57.5
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 4.4e-72 275.4 217 63.6
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 4.4e-72 275.4 253 55.3
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 7.5e-72 274.6 256 59.0
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 2.8e-71 272.7 252 57.1
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.1e-70 270.8 252 56.7
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 1.4e-70 270.4 243 58.0
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 5.4e-70 268.5 253 56.9
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 5.4e-70 268.5 230 60.4
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.7e-68 263.5 281 52.0
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 6.5e-68 261.5 245 56.3
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 5.5e-67 258.5 214 57.9
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 1.2e-66 257.3 240 56.7
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 3.6e-66 255.8 255 54.1
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 1.0e-65 254.2 250 54.0
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 4.0e-65 252.3 193 63.7
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 4.4e-64 248.8 235 54.9
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.3e-63 247.3 198 59.1
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 1.7e-63 246.9 249 52.2
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 2.2e-63 246.5 277 50.2
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 6.3e-63 245.0 246 54.9
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 4.5e-61 238.8 248 52.4
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 2.9e-60 236.1 246 51.6
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 3.8e-60 235.7 195 57.9
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 5.0e-60 235.3 203 57.6
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 5.0e-60 235.3 200 58.0
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 5.6e-59 231.9 249 49.0
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 2.8e-58 229.6 192 58.9
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 8.0e-58 228.0 196 54.6
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 1.0e-57 227.6 214 57.0
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.4e-57 227.3 230 49.1
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 3.0e-57 226.1 200 51.5
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 6.8e-57 224.9 261 50.2
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 2.6e-56 223.0 382 39.3
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 5.7e-56 221.9 202 53.5
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 5.7e-56 221.9 226 50.9
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 9.8e-56 221.1 246 50.8
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 1.3e-55 220.7 226 50.9
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 1.7e-55 220.3 246 47.6
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 1.7e-55 220.3 199 52.8
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 4.9e-55 218.8 226 48.7
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 3.2e-54 216.1 195 50.8
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 3.2e-54 216.1 198 55.1
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 7.0e-54 214.9 209 49.8
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 9.2e-54 214.5 198 52.0
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.2e-53 214.2 225 49.8
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.0e-53 213.4 182 57.1
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.7e-53 213.0 251 45.4
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 2.7e-53 213.0 198 52.0
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.5e-53 212.6 198 50.5
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 3.5e-53 212.6 201 52.2
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 3.5e-53 212.6 208 49.5
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 3.5e-53 212.6 208 49.5
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 1.3e-52 210.7 198 50.5
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 2.3e-52 209.9 252 46.8
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 3.0e-52 209.5 201 50.2
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 5.0e-52 208.8 210 48.1
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.5e-51 207.2 262 45.4
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.5e-51 207.2 237 45.6
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.5e-51 207.2 231 46.8
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 2.5e-51 206.5 200 52.0
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 5.6e-51 205.3 254 43.3
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 2.8e-50 203.0 197 50.8
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 4.7e-50 202.2 236 47.9
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 8.0e-50 201.4 252 46.4
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 3.1e-49 199.5 252 43.7
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 4.0e-49 199.1 197 52.8
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 1.3e-47 194.1 167 56.3
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 8.3e-47 191.4 231 45.9
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 2.7e-45 186.4 230 46.1
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 1.7e-44 183.7 171 50.3
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 1.7e-44 183.7 160 55.0
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 5.0e-44 182.2 197 49.2
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 8.6e-44 181.4 166 50.6
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 1.1e-43 181.0 251 43.0
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 3.3e-43 179.5 167 52.1
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 1.2e-42 177.6 227 44.5
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.4e-41 174.1 169 53.3
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 4.4e-40 169.1 166 53.0
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 4.4e-40 169.1 197 44.2
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 4.9e-39 165.6 209 43.1
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 6.4e-39 165.2 324 35.8
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 7.8e-37 158.3 173 47.4
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 3.3e-35 152.9 136 52.9
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.1e-33 147.9 208 42.3
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 8.4e-31 138.3 135 51.9
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 7.8e-29 131.7 244 35.2
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 3.9e-28 129.4 93 68.8
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 2.1e-26 123.6 177 42.4
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 5.4e-22 109.0 188 31.9
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 7.8e-21 105.1 88 59.1
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 8.7e-20 101.7 174 39.7
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 6.2e-18 95.5 192 30.2
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.8e-17 94.0 124 47.6
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.8e-17 94.0 81 54.3
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 2.0e-16 90.5 185 29.2
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 1.7e-15 87.4 214 26.6
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 1.7e-15 87.4 227 26.9
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.4e-14 84.3 185 28.1
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 4.2e-14 82.8 182 27.5
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.2e-13 81.3 189 27.5
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 1.2e-13 81.3 182 26.4
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 6.7e-12 75.5 183 27.3
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 3.3e-11 73.2 181 25.4
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 3.3e-11 73.2 219 28.3
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 7.4e-11 72.0 189 24.9
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 1.3e-10 71.2 244 27.0
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 1.2e-08 64.7 99 36.4
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 4.5e-08 62.8 70 45.7
CSS0038024 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D001339 2.2e-07 60.5 42 69.0
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 6.4e-07 58.9 134 36.6
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 3.2e-06 56.6 135 34.8
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 7.1e-06 55.5 48 54.2


User provided reference genes

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