Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.1e-114 416.8 221 100.0
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 6.2e-107 391.0 227 93.8
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 8.7e-101 370.5 229 90.0
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 9.1e-66 254.2 227 69.2
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 6.8e-53 211.5 236 55.1
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 9.8e-52 207.6 228 57.5
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 9.8e-52 207.6 228 57.5
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 9.8e-52 207.6 230 54.8
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 6.3e-51 204.9 225 58.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 7.7e-49 198.0 227 54.6
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 2.2e-48 196.4 237 54.9
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 5.0e-48 195.3 231 55.0
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 5.0e-48 195.3 231 52.8
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 5.0e-48 195.3 237 54.4
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-47 193.7 222 54.1
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.9e-47 193.4 243 55.6
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 2.5e-47 193.0 232 56.5
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 3.2e-47 192.6 240 53.3
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.5e-47 191.8 229 56.8
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.1e-46 189.9 243 53.1
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.1e-46 189.9 235 53.6
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.6e-46 189.1 229 56.8
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 6.1e-46 188.3 235 53.6
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.4e-45 187.2 241 51.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.4e-45 187.2 241 51.9
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.8e-45 186.8 228 57.0
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.3e-45 186.4 240 47.5
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.0e-45 186.0 226 55.8
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.0e-45 185.7 240 47.1
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 6.8e-45 184.9 240 47.1
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 6.8e-45 184.9 237 53.6
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-44 184.1 240 47.1
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.0e-44 183.3 222 53.2
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.0e-44 183.3 222 53.2
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 4.4e-44 182.2 222 52.3
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.5e-44 181.4 240 47.5
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 7.5e-44 181.4 236 51.7
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 2.2e-43 179.9 231 53.7
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 3.7e-43 179.1 248 51.2
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 3.7e-43 179.1 242 50.0
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.9e-43 178.7 238 55.0
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.4e-42 177.2 227 51.5
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.8e-42 176.8 247 48.6
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 3.1e-42 176.0 228 49.1
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.1e-42 176.0 236 53.8
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.1e-42 175.6 224 48.2
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 7.0e-42 174.9 215 49.8
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.2e-41 174.1 250 49.2
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 2.0e-41 173.3 227 51.1
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 7.7e-41 171.4 231 51.1
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.3e-40 170.6 250 48.4
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.7e-40 170.2 219 45.7
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.7e-40 170.2 229 49.3
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.3e-40 169.9 225 46.7
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 2.3e-40 169.9 234 48.7
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.8e-40 169.1 234 51.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.6e-40 167.9 224 47.3
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 8.6e-40 167.9 230 43.9
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.1e-39 167.5 240 49.2
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-39 167.5 232 45.7
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 1.1e-39 167.5 235 48.9
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.5e-39 167.2 222 46.8
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 3.3e-39 166.0 222 54.5
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 9.5e-39 164.5 249 46.6
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 9.5e-39 164.5 253 46.2
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.1e-38 163.3 222 48.6
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.1e-38 163.3 231 48.5
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.1e-38 161.8 210 49.5
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 6.1e-38 161.8 235 51.1
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 6.1e-38 161.8 247 48.6
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 8.0e-38 161.4 228 47.4
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.0e-37 161.0 231 48.5
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.4e-37 160.6 244 43.4
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 2.3e-37 159.8 227 48.9
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 5.2e-37 158.7 213 51.6
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-36 157.1 228 47.8
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.5e-36 157.1 217 47.0
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 7.5e-36 154.8 247 46.2
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 7.5e-36 154.8 227 48.0
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 9.8e-36 154.5 240 45.8
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 3.7e-35 152.5 236 43.2
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.7e-35 152.5 225 50.2
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.4e-35 151.8 255 44.7
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 9.2e-34 147.9 227 47.1
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.5e-33 146.0 224 41.1
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.5e-33 146.0 187 53.5
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.9e-32 142.5 193 55.4
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 6.6e-32 141.7 200 47.5
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 8.6e-32 141.4 273 42.9
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.5e-31 140.6 226 42.5
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.5e-31 140.6 230 37.8
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.2e-30 137.5 229 40.6
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.1e-30 136.7 226 42.9
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.0e-29 134.4 239 39.3
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 3.1e-29 132.9 232 40.9
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 5.2e-29 132.1 237 41.4
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.3e-27 127.5 218 41.7
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.7e-27 127.1 259 42.5
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 2.9e-27 126.3 224 42.9
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 6.4e-27 125.2 252 43.7
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 6.4e-27 125.2 228 41.7
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.9e-26 123.6 220 37.7
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.4e-26 123.2 231 43.7
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.1e-26 122.5 217 37.8
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 9.2e-26 121.3 225 37.8
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.2e-25 120.9 230 40.4
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.2e-25 120.9 229 37.6
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 2.0e-25 120.2 229 39.7
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 2.0e-25 120.2 229 39.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.7e-25 119.8 226 36.3
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 4.6e-25 119.0 228 38.6
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 6.0e-25 118.6 229 39.3
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.7e-24 117.1 226 37.6
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.7e-24 117.1 236 36.4
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 2.3e-24 116.7 250 40.0
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 3.9e-24 115.9 225 44.0
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 3.9e-24 115.9 225 44.0
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 6.6e-24 115.2 229 42.4
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.3e-23 112.8 224 37.9
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.3e-23 112.8 224 37.9
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 4.3e-23 112.5 223 41.3
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 4.3e-23 112.5 223 41.3
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 4.3e-23 112.5 223 41.3
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.6e-22 110.5 223 35.9
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 4.7e-22 109.0 222 35.6
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.1e-21 107.8 204 40.7
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.2e-20 104.4 226 34.1
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.3e-19 100.9 215 33.5
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.7e-19 100.5 235 34.9
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.9e-19 99.0 154 48.7
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.4e-18 96.7 217 34.6
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.2e-17 94.4 214 33.6
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.1e-17 93.6 222 32.9
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.3e-16 90.1 206 38.8
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 5.1e-16 89.0 245 29.8
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.9e-15 87.0 215 32.1
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.9e-15 87.0 202 39.1
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.9e-15 87.0 196 37.8
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.2e-14 84.3 210 34.3
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.2e-14 84.3 153 40.5
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 2.8e-14 83.2 127 44.1
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 2.8e-14 83.2 173 34.1
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.8e-14 83.2 132 40.9
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 3.6e-14 82.8 93 46.2
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.1e-13 81.3 116 50.9
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.4e-13 80.9 125 41.6
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 5.8e-12 75.5 229 34.5
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 4.9e-11 72.4 202 33.7
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 4.6e-09 65.9 149 35.6
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.0e-08 64.7 90 45.6
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 5.1e-08 62.4 201 33.8
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 5.6e-07 58.9 124 38.7
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 3.6e-06 56.2 92 44.6
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 6.2e-06 55.5 149 32.2
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 6.2e-06 55.5 148 31.1
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 8.1e-06 55.1 153 32.7


User provided reference genes

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