Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 2.0e-49 198.7 99 100.0
MELO3C027105.2 Cucumis melo HOM05D000735 ORTHO05D004669 2.0e-49 198.7 99 100.0
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 1.3e-48 196.1 99 99.0
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 1.4e-45 186.0 99 93.9
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 3.1e-42 174.9 103 87.4
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 4.1e-42 174.5 99 89.9
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 4.1e-42 174.5 92 93.5
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 9.1e-42 173.3 92 93.5
ATR0568G110 Amborella trichopoda HOM05D000735 ORTHO05D004669 2.7e-41 171.8 99 86.9
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 2.7e-41 171.8 92 92.4
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 2.7e-41 171.8 92 92.4
QL05p065759 Quercus lobata HOM05D000735 ORTHO05D004669 2.7e-41 171.8 100 87.0
MD10G1342600 Malus domestica HOM05D000735 ORTHO05D004669 3.5e-41 171.4 89 95.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 4.5e-41 171.0 90 93.3
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 5.9e-41 170.6 92 91.3
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 5.9e-41 170.6 99 86.9
GSVIVG01019361001 Vitis vinifera HOM05D000735 ORTHO05D004669 5.9e-41 170.6 92 90.2
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 7.7e-41 170.2 99 87.9
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 1.0e-40 169.9 100 86.0
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 1.3e-40 169.5 92 90.2
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 1.3e-40 169.5 92 90.2
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 1.3e-40 169.5 92 90.2
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 1.3e-40 169.5 92 91.3
Eucgr.E04240 Eucalyptus grandis HOM05D000735 ORTHO05D004669 1.3e-40 169.5 92 91.3
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 1.3e-40 169.5 92 90.2
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 1.3e-40 169.5 98 87.8
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 1.3e-40 169.5 98 87.8
Oeu031375.1 Olea europaea HOM05D000735 ORTHO05D004669 1.3e-40 169.5 99 85.9
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 1.7e-40 169.1 92 89.1
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 1.7e-40 169.1 92 90.2
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 1.7e-40 169.1 92 90.2
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 1.7e-40 169.1 92 91.3
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 1.7e-40 169.1 92 92.4
SalBow8G3892 Salvia bowleyana HOM05D000735 ORTHO05D004669 1.7e-40 169.1 99 86.9
TPR.G10488 Trifolium pratense HOM05D000735 ORTHO05D004669 1.7e-40 169.1 97 86.6
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 1.7e-40 169.1 96 87.5
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 2.3e-40 168.7 92 90.2
Psat1g172120 Pisum sativum HOM05D000735 ORTHO05D004669 2.3e-40 168.7 97 86.6
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 2.9e-40 168.3 92 89.1
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 2.9e-40 168.3 92 89.1
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 2.9e-40 168.3 92 89.1
BraA07t30348Z Brassica rapa HOM05D000290 ORTHO05D006513 2.9e-40 168.3 92 89.1
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 2.9e-40 168.3 89 93.3
TAR365G1081 Trochodendron aralioides HOM05D000735 ORTHO05D004669 2.9e-40 168.3 92 90.2
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 3.8e-40 167.9 92 89.1
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 3.8e-40 167.9 92 89.1
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 3.8e-40 167.9 92 89.1
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 3.8e-40 167.9 92 89.1
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 3.8e-40 167.9 96 85.4
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 5.0e-40 167.5 92 90.2
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 6.5e-40 167.2 92 89.1
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 6.5e-40 167.2 96 87.5
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 6.5e-40 167.2 92 89.1
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 8.6e-40 166.8 92 89.1
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 8.6e-40 166.8 92 88.0
Cc09_g00020 Coffea canephora HOM05D000735 ORTHO05D004669 8.6e-40 166.8 99 84.8
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 8.6e-40 166.8 97 85.6
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 8.6e-40 166.8 89 92.1
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 8.6e-40 166.8 97 85.6
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 1.1e-39 166.4 99 85.9
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 1.5e-39 166.0 92 88.0
Lalb_Chr18g0057591 Lupinus albus HOM05D000735 ORTHO05D004669 1.5e-39 166.0 92 89.1
Lalb_Chr20g0119781 Lupinus albus HOM05D000735 ORTHO05D004669 1.5e-39 166.0 96 87.5
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.5e-39 166.0 92 88.0
CAN.G642.3 Capsicum annuum HOM05D000735 ORTHO05D004669 1.9e-39 165.6 89 89.9
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 1.9e-39 165.6 92 85.9
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 1.9e-39 165.6 92 85.9
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 1.9e-39 165.6 92 89.1
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 1.9e-39 165.6 92 89.1
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 1.9e-39 165.6 92 89.1
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 1.9e-39 165.6 99 84.8
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 1.9e-39 165.6 99 83.8
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 1.9e-39 165.6 89 89.9
Sopen04g025520 Solanum pennellii HOM05D000735 ORTHO05D004669 1.9e-39 165.6 89 89.9
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 2.5e-39 165.2 92 89.1
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 2.5e-39 165.2 92 88.0
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 2.5e-39 165.2 92 88.0
Sc25g0001880 Simmondsia chinensis HOM05D000735 ORTHO05D004669 2.5e-39 165.2 92 88.0
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 3.2e-39 164.9 92 89.1
RcHm_v2.0_Chr5g0000031 Rosa chinensis HOM05D000735 ORTHO05D004669 3.2e-39 164.9 89 91.0
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 3.2e-39 164.9 92 89.1
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 4.2e-39 164.5 92 85.9
HPP92_003015 Vanilla planifolia HOM05D000735 ORTHO05D004669 4.2e-39 164.5 90 88.9
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 4.2e-39 164.5 90 88.9
CDE06G1452 Ceratophyllum demersum HOM05D000735 ORTHO05D004669 5.5e-39 164.1 92 85.9
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 5.5e-39 164.1 105 81.9
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 5.5e-39 164.1 105 79.0
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 7.2e-39 163.7 88 93.2
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 9.5e-39 163.3 97 84.5
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.2e-38 162.9 92 88.0
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.6e-38 162.5 92 87.0
vmacro03581 Vaccinium macrocarpon HOM05D000735 ORTHO05D004669 1.6e-38 162.5 92 87.0
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 2.8e-38 161.8 92 88.0
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 2.8e-38 161.8 92 88.0
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 3.6e-38 161.4 100 82.0
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 3.6e-38 161.4 92 87.0
VMungo1215G1296 Vigna mungo HOM05D000735 ORTHO05D004669 8.0e-38 160.2 88 92.0
Ah.01g012230 Amaranthus hybridus HOM05D000735 ORTHO05D004669 1.0e-37 159.8 96 83.3
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 1.0e-37 159.8 90 85.6
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 3.0e-37 158.3 88 87.5
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 3.0e-37 158.3 88 87.5
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 1.2e-36 156.4 91 82.4
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 2.6e-36 155.2 99 79.8
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 5.7e-36 154.1 96 79.2
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.3e-35 152.9 92 85.9
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 2.2e-35 152.1 96 79.2
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 2.8e-35 151.8 129 65.1
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 6.3e-35 150.6 94 77.7
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 8.3e-35 150.2 96 78.1
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 8.3e-35 150.2 96 78.1
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 8.3e-35 150.2 91 80.2
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 1.2e-33 146.4 99 74.7
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 7.3e-31 137.1 69 94.2
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 1.0e-29 133.3 90 75.6
AagrBONN_evm.TU.Sc2ySwM_228.2563 Anthoceros agrestis HOM05D000735 ORTHO05D004669 5.7e-28 127.5 86 75.6
CBR_g4710 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-22 109.4 84 57.1
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 3.6e-22 108.2 92 58.7
CARHR046050 Cardamine hirsuta HOM05D000735 ORTHO05D004669 1.5e-20 102.8 68 79.4
Pp3c9_15590 Physcomitrium patens HOM05D000735 ORTHO05D004669 7.5e-20 100.5 93 53.8
Mapoly0058s0105 Marchantia polymorpha HOM05D000735 ORTHO05D004669 1.7e-19 99.4 96 53.1
Pp3c7_5300 Physcomitrium patens HOM05D000735 ORTHO05D004669 1.4e-18 96.3 85 52.9
CBR_g54785 Chara braunii HOM05D000735 ORTHO05D004669 1.2e-17 93.2 92 48.9
A02p23020 Brassica napus HOM05D000735 ORTHO05D004669 1.1e-15 86.7 58 69.0
BraA02t07299Z Brassica rapa HOM05D000735 ORTHO05D004669 1.1e-15 86.7 58 69.0
SMO364G0202 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 1.9e-15 85.9 70 60.0
PRCOL_00002497 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 3.6e-14 81.6 86 44.2
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 5.8e-12 74.3 45 82.2
MCO07G302 Micromonas commoda HOM05D000735 ORTHO05D004669 1.3e-11 73.2 76 51.3
Cre16.g671250 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 2.9e-11 72.0 86 44.2
Cre02.g144550 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 6.4e-11 70.9 86 43.0
Cre13.g589800 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 1.1e-10 70.1 84 40.5
MCO01G278 Micromonas commoda HOM05D000735 ORTHO05D004669 4.6e-09 64.7 89 41.6
SEGI_16122 Sequoiadendron giganteum HOM05D000735 ORTHO05D004669 3.3e-07 58.5 71 47.9
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 1.6e-06 56.2 33 69.7


User provided reference genes

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