Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.6e-140 502.7 236 100.0
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.2e-77 292.0 171 80.7
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 7.4e-74 281.2 135 91.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 2.7e-68 262.7 133 85.7
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.4e-64 250.4 134 80.6
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 7.0e-64 248.1 143 74.1
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 2.6e-63 246.1 133 76.7
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 7.7e-63 244.6 135 76.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 7.7e-63 244.6 135 77.8
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.0e-62 244.2 135 77.0
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.0e-62 244.2 135 77.0
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.3e-62 243.8 134 76.1
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.7e-62 243.4 135 75.6
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 3.8e-62 242.3 134 78.4
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 5.0e-62 241.9 134 76.9
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 6.5e-62 241.5 135 76.3
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.5e-62 241.5 134 74.6
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.5e-61 240.4 135 74.8
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.5e-61 240.4 137 74.5
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.5e-61 240.4 134 76.1
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.5e-61 240.4 134 76.1
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.9e-61 240.0 137 71.5
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.9e-61 240.0 137 70.1
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 5.5e-61 238.4 135 72.6
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 7.2e-61 238.0 134 75.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.2e-60 237.3 132 74.2
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.2e-60 237.3 135 75.6
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.6e-60 236.9 134 76.1
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.6e-60 236.9 134 76.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 2.1e-60 236.5 137 72.3
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.1e-60 236.5 135 74.1
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.7e-60 236.1 137 74.5
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.6e-60 235.7 135 73.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.6e-60 235.7 136 74.3
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 6.1e-60 235.0 135 73.3
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 8.0e-60 234.6 134 74.6
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.8e-59 233.4 137 73.7
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.8e-59 233.4 134 72.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.8e-59 233.4 135 72.6
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 3.0e-59 232.6 135 72.6
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 3.0e-59 232.6 134 73.9
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 3.0e-59 232.6 137 72.3
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.0e-59 232.3 136 72.8
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 4.0e-59 232.3 137 73.0
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 4.0e-59 232.3 135 72.6
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 4.0e-59 232.3 137 73.0
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 4.0e-59 232.3 134 73.9
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 5.2e-59 231.9 134 74.6
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 5.2e-59 231.9 135 73.3
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 5.2e-59 231.9 129 75.2
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 5.2e-59 231.9 134 73.9
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 6.7e-59 231.5 143 69.9
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 8.8e-59 231.1 134 73.9
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 8.8e-59 231.1 137 72.3
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.5e-58 230.3 135 69.6
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 2.0e-58 229.9 135 70.4
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 2.0e-58 229.9 135 69.6
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.0e-58 229.9 134 73.1
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 2.6e-58 229.6 133 72.2
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 3.3e-58 229.2 140 70.0
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.4e-58 228.8 137 73.0
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.4e-58 228.8 134 71.6
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 7.5e-58 228.0 129 72.9
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 7.5e-58 228.0 127 75.6
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 9.7e-58 227.6 128 75.8
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 9.7e-58 227.6 138 68.1
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-57 226.9 138 68.1
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 2.8e-57 226.1 133 69.9
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 6.3e-57 224.9 135 68.9
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.3e-57 224.9 135 69.6
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 6.3e-57 224.9 140 70.7
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 8.2e-57 224.6 134 72.4
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.4e-56 223.0 137 70.8
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.4e-56 223.0 127 72.4
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.1e-56 222.6 138 66.7
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 4.1e-56 222.2 135 68.9
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 5.3e-56 221.9 131 68.7
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.2e-55 220.7 136 68.4
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-55 220.7 137 70.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.2e-55 220.7 135 66.7
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.6e-55 220.3 132 71.2
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.6e-55 219.5 134 70.9
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 2.6e-55 219.5 136 66.9
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 2.6e-55 219.5 134 68.7
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 3.5e-55 219.2 134 69.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.5e-55 219.2 132 68.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 3.5e-55 219.2 132 72.0
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.5e-55 218.8 121 74.4
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 5.9e-55 218.4 135 68.9
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 7.7e-55 218.0 134 68.7
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.0e-54 217.6 134 69.4
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.0e-54 217.6 134 69.4
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.8e-54 215.7 135 67.4
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 5.0e-54 215.3 137 65.7
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 5.0e-54 215.3 134 68.7
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 5.0e-54 215.3 133 69.2
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.0e-54 215.3 133 66.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 5.0e-54 215.3 136 67.6
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 8.5e-54 214.5 135 67.4
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-53 214.2 133 66.2
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.5e-53 213.8 134 67.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.9e-53 213.4 133 68.4
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.9e-53 213.4 123 69.9
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.5e-53 213.0 121 76.0
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 3.2e-53 212.6 125 69.6
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 4.2e-53 212.2 134 65.7
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 4.2e-53 212.2 133 66.9
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 4.2e-53 212.2 128 69.5
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 9.4e-53 211.1 128 71.1
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.6e-52 210.3 121 72.7
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.6e-52 210.3 131 67.9
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 2.1e-52 209.9 133 67.7
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 3.6e-52 209.1 129 69.0
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.4e-51 207.2 124 72.6
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.8e-51 206.8 134 66.4
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 6.8e-51 204.9 120 67.5
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 8.8e-51 204.5 173 56.1
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.2e-50 204.1 135 65.2
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.0e-50 203.4 125 67.2
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 5.7e-50 201.8 146 62.3
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 6.3e-49 198.4 129 65.1
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.1e-48 197.6 134 66.4
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 9.1e-48 194.5 121 69.4
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 5.9e-47 191.8 129 63.6
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.0e-46 191.0 130 63.1
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-45 187.6 138 56.5
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.5e-45 187.2 132 62.9
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.9e-45 186.8 125 62.4
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.9e-45 186.8 112 72.3
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 9.4e-45 184.5 131 58.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-44 183.7 136 60.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.4e-43 180.6 130 61.5
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 5.7e-42 175.3 101 71.3
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 9.8e-42 174.5 130 59.2
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.1e-40 171.0 136 60.3
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.3e-38 163.3 125 60.0
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 6.6e-38 161.8 96 70.8
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.3e-37 159.5 117 59.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.6e-36 156.0 122 55.7
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 5.2e-35 152.1 96 69.8
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 5.7e-34 148.7 99 64.6
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 7.0e-32 141.7 141 46.1
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.2e-31 141.0 85 69.4
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.5e-29 134.0 74 77.0
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.9e-25 119.8 72 72.2
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.9e-25 119.8 112 50.9
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.4e-24 117.5 73 72.6
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-20 103.6 80 52.5
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-19 101.3 63 66.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.7e-17 94.0 79 53.2


User provided reference genes

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