Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.2e-296 1022.3 495 100.0
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.2e-288 995.7 494 97.6
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 1.0e-258 896.3 501 86.2
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 3.1e-223 778.5 500 80.0
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 7.9e-203 710.7 492 72.4
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 1.0e-202 710.3 491 73.3
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 2.3e-202 709.1 501 71.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 2.2e-200 702.6 491 72.5
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 4.8e-200 701.4 491 71.9
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.1e-199 700.3 505 71.7
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.8e-199 699.5 485 72.8
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 4.1e-199 698.4 493 72.8
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 7.0e-199 697.6 510 69.2
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 9.1e-199 697.2 485 71.8
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.5e-198 695.3 491 71.5
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.3e-197 693.3 488 71.5
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.7e-197 693.0 496 71.2
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 1.7e-197 693.0 496 70.8
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.7e-197 693.0 491 72.1
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 9.4e-196 687.2 493 70.8
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 9.4e-196 687.2 495 71.3
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.4e-194 683.3 494 70.4
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 4.0e-194 681.8 500 69.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 6.7e-194 681.0 493 70.4
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.5e-193 679.9 486 70.2
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.6e-193 679.1 491 70.1
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 5.7e-193 677.9 488 70.5
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.8e-192 675.6 483 72.5
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 6.3e-192 674.5 480 69.8
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 8.2e-192 674.1 500 70.8
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.1e-191 673.7 491 70.3
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.4e-191 672.5 498 69.3
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 5.3e-191 671.4 478 70.1
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.2e-190 670.2 492 68.9
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 3.5e-190 668.7 493 69.2
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.0e-189 667.2 478 70.7
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.7e-189 666.4 492 70.1
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.2e-189 666.0 491 69.7
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 4.2e-188 661.8 482 69.1
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.6e-187 659.8 482 69.1
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 2.1e-187 659.4 492 67.9
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.8e-186 656.4 491 67.8
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.0e-185 652.9 489 68.7
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.3e-184 650.2 482 68.9
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 2.8e-184 649.0 488 69.3
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 2.8e-184 649.0 488 69.3
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 3.7e-184 648.7 489 68.9
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 4.8e-184 648.3 482 68.7
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 1.4e-183 646.7 527 65.3
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.4e-183 646.7 483 68.7
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 4.1e-183 645.2 488 68.0
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 5.4e-183 644.8 491 68.8
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 2.0e-182 642.9 477 69.4
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 7.7e-182 641.0 486 68.1
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.3e-181 640.2 481 69.0
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.9e-181 639.0 478 69.2
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.8e-181 638.6 488 68.0
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 6.1e-179 631.3 485 64.9
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 5.2e-178 628.2 480 67.9
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 1.2e-177 627.1 492 65.9
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 9.2e-175 617.5 541 60.8
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.5e-174 615.5 480 65.0
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.5e-174 615.5 495 63.6
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.7e-173 613.2 450 70.7
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 2.9e-173 612.5 496 64.7
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 6.6e-173 611.3 498 64.7
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 8.6e-173 610.9 491 65.6
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.1e-172 610.5 476 66.8
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 2.5e-172 609.4 474 65.4
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.8e-170 603.2 480 66.0
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 2.6e-169 599.4 483 63.6
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 9.8e-169 597.4 475 66.3
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.3e-168 597.0 491 63.7
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 5.9e-166 588.2 474 65.4
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 1.1e-164 583.9 477 64.4
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.4e-162 577.0 473 64.5
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 4.0e-162 575.5 481 62.8
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 3.4e-161 572.4 490 60.2
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 4.4e-161 572.0 495 62.2
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.9e-160 569.3 483 62.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 7.0e-159 564.7 475 63.2
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.0e-157 560.8 494 59.7
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.9e-156 556.6 477 61.0
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 2.1e-155 553.1 408 67.6
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 5.2e-154 548.5 482 62.0
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 1.5e-153 547.0 497 57.3
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 3.7e-152 542.3 557 52.6
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 2.7e-150 536.2 495 59.0
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 4.7e-147 525.4 473 59.2
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.2e-145 520.8 382 69.6
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 2.0e-145 520.0 410 67.1
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.7e-144 516.9 526 56.1
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 3.8e-144 515.8 487 56.1
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.2e-143 512.7 477 60.4
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 8.6e-141 504.6 508 54.1
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 9.6e-140 501.1 273 86.4
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 2.8e-139 499.6 475 56.6
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 8.1e-139 498.0 448 59.8
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 1.2e-137 494.2 399 64.2
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 9.9e-137 491.1 388 65.5
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.9e-132 476.9 512 54.9
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 3.1e-130 469.5 542 50.2
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 9.9e-129 464.5 475 53.1
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.8e-125 453.8 453 56.3
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.8e-125 453.8 511 49.3
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 2.5e-124 449.9 860 36.2
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 9.0e-122 441.4 264 78.8
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 4.5e-121 439.1 420 57.9
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 3.7e-115 419.5 347 64.0
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 2.4e-106 390.2 476 48.7
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 4.5e-105 386.0 394 57.1
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-104 384.4 483 48.0
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 6.9e-98 362.1 439 52.2
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-98 361.7 640 38.6
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 2.9e-88 330.1 223 68.6
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.1e-87 328.2 349 53.9
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 5.0e-80 302.8 484 37.6
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 8.0e-78 295.4 193 71.5
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 3.0e-69 266.9 265 49.4
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 2.1e-62 244.2 132 84.1
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 2.8e-62 243.8 281 44.5
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 9.8e-60 235.3 125 86.4
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 5.9e-57 226.1 298 41.3
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.0e-56 225.3 284 41.5
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 7.3e-55 219.2 400 38.2
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 4.6e-49 199.9 113 83.2
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.1e-46 191.0 106 84.9
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 5.4e-34 149.8 86 82.6
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 2.5e-23 114.4 76 69.7
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.5e-20 105.1 60 78.3
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.4e-20 104.0 81 64.2
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 4.6e-17 93.6 66 60.6
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 3.9e-16 90.5 53 81.1
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 3.6e-14 84.0 41 90.2
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 4.0e-13 80.5 69 53.6
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.3e-11 75.5 157 32.5
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 1.2e-09 68.9 49 63.3
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 2.7e-09 67.8 45 68.9
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 4.6e-09 67.0 72 48.6


User provided reference genes

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