Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 2.4e-258 895.2 527 100.0
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 2.6e-191 672.5 489 87.7
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 7.2e-170 601.3 500 78.8
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 1.0e-160 570.9 510 65.3
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 1.1e-98 364.8 507 49.3
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 1.3e-97 361.3 520 47.3
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 4.6e-92 342.8 422 48.8
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 6.1e-92 342.4 422 48.8
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 5.9e-87 325.9 384 50.8
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 1.6e-84 317.8 422 46.7
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 7.4e-82 308.9 515 43.5
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 6.3e-81 305.8 492 45.7
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 6.3e-81 305.8 502 44.8
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 9.1e-80 302.0 462 42.4
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 1.2e-79 301.6 438 42.5
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 7.7e-79 298.9 500 43.8
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 7.7e-79 298.9 502 45.4
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 1.7e-78 297.7 509 43.0
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 3.8e-78 296.6 444 42.6
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.4e-77 294.7 509 42.6
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 2.5e-77 293.9 385 46.2
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 2.5e-77 293.9 499 43.9
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 4.2e-77 293.1 377 46.4
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 7.2e-77 292.4 528 41.7
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 9.4e-77 292.0 452 41.4
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 4.7e-76 289.7 413 42.9
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 6.1e-76 289.3 385 45.5
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 6.1e-76 289.3 394 45.2
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 1.0e-75 288.5 508 43.3
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 6.7e-75 285.8 510 48.8
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 4.4e-74 283.1 377 41.9
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 4.4e-74 283.1 391 48.8
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 2.2e-73 280.8 379 44.9
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 2.2e-73 280.8 267 53.9
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 2.8e-73 280.4 379 43.3
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 3.7e-73 280.0 383 44.1
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 1.1e-72 278.5 437 42.1
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 1.1e-72 278.5 506 47.4
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 1.4e-72 278.1 505 43.0
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 2.4e-72 277.3 378 43.7
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 4.1e-72 276.6 555 42.7
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 5.3e-72 276.2 438 41.1
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 9.1e-72 275.4 432 41.7
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 1.2e-71 275.0 383 43.9
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 1.2e-71 275.0 424 39.6
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 2.0e-71 274.2 381 42.5
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 4.5e-71 273.1 377 43.8
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 5.9e-71 272.7 405 43.5
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 1.0e-70 271.9 411 42.6
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 2.2e-70 270.8 377 43.0
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 2.9e-70 270.4 373 43.4
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 2.9e-70 270.4 375 43.2
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 6.5e-70 269.2 386 41.5
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 1.9e-69 267.7 375 42.9
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 4.2e-69 266.5 496 43.1
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 1.2e-68 265.0 382 41.9
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 2.1e-68 264.2 375 41.9
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 2.7e-68 263.8 377 43.2
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 1.8e-67 261.2 394 42.6
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 2.3e-67 260.8 396 42.4
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 3.0e-67 260.4 379 40.4
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 5.7e-66 256.1 381 46.5
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 9.7e-66 255.4 262 51.5
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 9.7e-66 255.4 324 43.8
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 1.3e-65 255.0 389 41.6
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 1.3e-65 255.0 487 37.6
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 1.7e-65 254.6 499 41.7
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 2.2e-65 254.2 371 40.2
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 1.4e-64 251.5 408 40.2
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 1.8e-64 251.1 382 39.5
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 1.8e-64 251.1 382 39.5
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 7.7e-63 245.7 446 36.5
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 1.7e-62 244.6 440 36.1
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 3.8e-62 243.4 446 35.7
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 8.5e-62 242.3 401 39.9
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 2.1e-60 237.7 380 40.8
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 2.1e-60 237.7 257 47.5
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 8.8e-59 232.3 266 48.9
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 9.8e-58 228.8 402 38.1
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 7.0e-56 222.6 264 44.7
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 2.7e-55 220.7 291 43.0
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 1.1e-53 215.3 353 39.7
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 5.5e-53 213.0 379 36.7
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 9.4e-53 212.2 343 38.5
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 1.0e-51 208.8 263 45.6
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 4.9e-49 199.9 498 34.9
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 4.1e-48 196.8 396 42.4
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 3.6e-44 183.7 305 36.7
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 5.2e-43 179.9 267 40.4
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 2.2e-41 174.5 276 37.7
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 3.5e-39 167.2 303 38.0
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 1.3e-38 165.2 177 49.2
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 3.3e-37 160.6 378 32.0
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 2.8e-36 157.5 211 47.9
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 3.5e-31 140.6 259 38.2
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 7.8e-31 139.4 144 52.8
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.7e-30 138.3 364 33.8
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.1e-29 135.6 288 36.5
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 9.8e-26 122.5 396 27.3
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 9.8e-26 122.5 308 39.9
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 8.3e-25 119.4 150 47.3
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.9e-24 118.2 233 34.3
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 5.6e-21 106.7 97 54.6
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 6.4e-17 93.2 113 47.8
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 6.2e-12 76.6 57 68.4
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 1.2e-10 72.4 72 50.0
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 3.8e-09 67.4 89 49.4
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.4e-08 65.5 131 35.9
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.4e-08 64.7 141 34.8
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.4e-08 64.7 141 34.8
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 2.4e-08 64.7 123 35.8
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 4.2e-08 63.9 130 34.6
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 7.1e-08 63.2 133 36.1
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.6e-07 62.0 126 37.3
RcHm_v2.0_Chr1g0329501 Rosa chinensis HOM05D005384 ORTHO05D006477 2.7e-07 61.2 126 36.5
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 2.7e-07 61.2 140 32.9
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 3.5e-07 60.8 126 38.1
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 3.5e-07 60.8 159 32.1
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 4.6e-07 60.5 117 35.0
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 6.0e-07 60.1 133 37.6
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 7.8e-07 59.7 112 36.6
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 7.8e-07 59.7 277 25.3
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 7.8e-07 59.7 126 34.9
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 7.8e-07 59.7 138 31.2
Phvul.003G273500 Phaseolus vulgaris HOM05D005384 ORTHO05D006477 1.0e-06 59.3 135 32.6
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 1.3e-06 58.9 96 39.6
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 1.3e-06 58.9 159 31.4
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 1.7e-06 58.5 140 32.1
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 2.3e-06 58.2 128 34.4
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 2.3e-06 58.2 124 33.9
Sp5g08170 Schrenkiella parvula HOM05D005384 ORTHO05D006477 2.3e-06 58.2 127 36.2
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 3.0e-06 57.8 138 32.6
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 3.9e-06 57.4 138 32.6
A09p47220 Brassica napus HOM05D005384 ORTHO05D006477 3.9e-06 57.4 140 36.4
FvH4_7g04410 Fragaria vesca HOM05D005384 ORTHO05D006477 3.9e-06 57.4 126 34.1
FAN03G3298 Fragaria x ananassa HOM05D005384 ORTHO05D006477 3.9e-06 57.4 126 34.1
FAN06G1991 Fragaria x ananassa HOM05D005384 ORTHO05D006477 3.9e-06 57.4 126 34.1
FAN10G2966 Fragaria x ananassa HOM05D005384 ORTHO05D006477 3.9e-06 57.4 126 34.1
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 3.9e-06 57.4 124 33.1
VMungo0251G2756 Vigna mungo HOM05D005384 ORTHO05D006477 5.1e-06 57.0 135 31.9
Glyma.16G102300 Glycine max HOM05D005384 ORTHO05D006477 6.6e-06 56.6 124 33.1
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 6.6e-06 56.6 122 32.8
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 6.6e-06 56.6 126 34.1
Hund21526 Selenicereus undatus HOM05D005384 ORTHO05D006477 6.6e-06 56.6 116 34.5
Eucgr.J01644 Eucalyptus grandis HOM05D005384 ORTHO05D006477 8.7e-06 56.2 138 35.5
Glyma.08G266700 Glycine max HOM05D005384 ORTHO05D006477 8.7e-06 56.2 124 33.1
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 8.7e-06 56.2 138 31.2


User provided reference genes

Program Settings