Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 1.3e-93 346.3 168 100.0
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 3.7e-59 231.9 205 63.4
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 5.9e-57 224.6 205 62.4
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 1.4e-45 186.8 205 52.7
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 1.4e-45 186.8 190 55.3
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 1.5e-44 183.3 205 51.2
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 3.3e-44 182.2 204 52.5
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 3.3e-44 182.2 205 51.2
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 1.7e-43 179.9 206 52.4
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 2.8e-43 179.1 202 52.0
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 3.7e-43 178.7 202 51.0
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 4.8e-43 178.3 207 48.8
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 8.2e-43 177.6 206 50.5
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 1.4e-42 176.8 205 50.2
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 1.8e-42 176.4 195 51.8
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 4.1e-42 175.3 189 51.3
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 7.0e-42 174.5 206 50.0
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 7.0e-42 174.5 189 51.3
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 9.1e-42 174.1 199 52.8
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 9.1e-42 174.1 199 52.8
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 1.2e-41 173.7 205 49.3
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 1.6e-41 173.3 205 50.2
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 1.6e-41 173.3 206 51.0
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.6e-41 173.3 205 49.3
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 1.6e-41 173.3 206 50.0
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 2.0e-41 172.9 199 52.3
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 2.0e-41 172.9 189 50.3
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 3.5e-41 172.2 200 50.5
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 3.5e-41 172.2 202 50.5
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 4.5e-41 171.8 207 48.3
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 5.9e-41 171.4 204 51.0
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 1.0e-40 170.6 200 50.0
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.0e-40 170.6 200 50.0
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 1.0e-40 170.6 204 49.0
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.3e-40 170.2 209 48.3
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.3e-40 170.2 209 48.3
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 3.8e-40 168.7 208 49.0
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 3.8e-40 168.7 193 50.3
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 5.0e-40 168.3 209 47.8
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 5.0e-40 168.3 210 46.7
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 6.5e-40 167.9 208 48.1
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 1.9e-39 166.4 208 47.1
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 3.2e-39 165.6 205 47.8
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 5.5e-39 164.9 172 53.5
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 9.4e-39 164.1 200 48.5
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 1.2e-38 163.7 172 53.5
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 1.2e-38 163.7 207 47.3
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 2.1e-38 162.9 195 48.7
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 2.7e-38 162.5 195 48.7
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 3.6e-38 162.2 203 48.3
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 6.1e-38 161.4 206 45.1
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 1.4e-37 160.2 204 45.6
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 1.8e-37 159.8 216 45.8
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 1.8e-37 159.8 173 53.2
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 2.3e-37 159.5 208 43.8
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 5.2e-37 158.3 209 46.4
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 5.2e-37 158.3 211 45.5
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 8.8e-37 157.5 207 44.9
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 1.5e-36 156.8 207 43.5
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 2.0e-36 156.4 206 44.2
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 2.0e-36 156.4 210 43.8
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 3.3e-36 155.6 209 42.6
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 3.3e-36 155.6 207 43.0
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 3.3e-36 155.6 207 43.0
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 3.3e-36 155.6 207 42.0
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 5.7e-36 154.8 207 43.0
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.3e-35 153.7 204 46.1
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 2.2e-35 152.9 154 56.5
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 2.8e-35 152.5 204 42.2
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 2.8e-35 152.5 207 41.1
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 3.7e-35 152.1 137 59.1
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 1.1e-34 150.6 251 40.2
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 1.4e-34 150.2 207 42.5
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 1.8e-34 149.8 207 41.1
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 1.8e-34 149.8 165 50.3
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 4.1e-34 148.7 204 45.6
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 7.0e-34 147.9 211 44.5
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 7.0e-34 147.9 218 44.5
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 1.2e-33 147.1 209 44.5
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 4.5e-33 145.2 202 44.6
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.7e-32 143.3 222 40.1
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 8.5e-32 141.0 193 46.6
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 1.1e-31 140.6 171 49.7
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 2.5e-31 139.4 156 50.6
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 2.5e-31 139.4 156 50.6
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 2.5e-31 139.4 151 51.0
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 7.2e-31 137.9 246 36.6
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 9.4e-31 137.5 90 68.9
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 1.2e-30 137.1 218 39.4
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 4.7e-30 135.2 202 41.1
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 8.0e-30 134.4 173 43.9
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 8.0e-30 134.4 155 48.4
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 3.0e-29 132.5 172 47.7
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 5.2e-29 131.7 148 47.3
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 5.2e-29 131.7 210 42.9
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 1.2e-28 130.6 150 50.7
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 2.6e-28 129.4 113 61.1
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 5.7e-28 128.3 113 60.2
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 3.7e-27 125.6 205 38.0
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 3.7e-27 125.6 208 41.8
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 4.8e-27 125.2 146 50.0
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 1.2e-25 120.6 153 45.8
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 2.2e-24 116.3 135 50.4
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 1.9e-23 113.2 218 39.4
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 7.2e-23 111.3 54 96.3
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 4.0e-21 105.5 95 55.8
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 5.9e-17 91.7 55 74.5
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 1.9e-15 86.7 111 49.5
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 1.4e-13 80.5 181 33.7
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 5.2e-13 78.6 186 31.7
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 3.7e-11 72.4 88 50.0
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 8.3e-11 71.2 122 40.2
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 8.3e-11 71.2 122 40.2
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 8.6e-08 61.2 110 40.9


User provided reference genes

Program Settings